Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi

B Wu, M Hussain, W Zhang, M Stadler, X Liu, M Xiang - Mycology, 2019 - Taylor & Francis
The global bio-diversity of fungi has been extensively investigated and their species number
has been estimated. Notably, the development of molecular phylogeny has revealed an …

Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …

Forest tree growth is linked to mycorrhizal fungal composition and function across Europe

MA Anthony, TW Crowther, S Van Der Linde… - The ISME …, 2022 - academic.oup.com
Most trees form symbioses with ectomycorrhizal fungi (EMF) which influence access to
growth-limiting soil resources. Mesocosm experiments repeatedly show that EMF species …

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

B Beckers, M Op De Beeck, N Weyens, W Boerjan… - Microbiome, 2017 - Springer
Background The plant microbiome represents one of the key determinants of plant health
and productivity by providing a plethora of functional capacities such as access to low …

Accurate estimation of fungal diversity and abundance through improved lineage-specific primers optimized for Illumina amplicon sequencing

DL Taylor, WA Walters, NJ Lennon… - Applied and …, 2016 - Am Soc Microbiol
While high-throughput sequencing methods are revolutionizing fungal ecology, recovering
accurate estimates of species richness and abundance has proven elusive. We sought to …

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

M Urbanová, J Šnajdr, P Baldrian - Soil Biology and Biochemistry, 2015 - Elsevier
In forest ecosystems, trees represent the major primary producers and affect the chemical
composition and microbial processes in the ecosystem via specific litter chemistry and …

Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing …

J Bengtsson‐Palme, M Ryberg… - Methods in ecology …, 2013 - Wiley Online Library
The nuclear ribosomal internal transcribed spacer (ITS) region is the primary choice for
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …

Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition

W Purahong, T Wubet, G Lentendu… - Molecular …, 2016 - Wiley Online Library
Microorganisms play a crucial role in the biological decomposition of plant litter in terrestrial
ecosystems. Due to the permanently changing litter quality during decomposition, studies of …

[PDF][PDF] Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

L Tedersoo, S Anslan, M Bahram, S Põlme, T Riit… - …, 2015 - mycokeys.pensoft.net
Rapid development of high-throughput (HTS) molecular identification methods has
revolutionized our knowledge about taxonomic diversity and ecology of fungi. However …

High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples

H Toju, AS Tanabe, S Yamamoto, H Sato - PloS one, 2012 - journals.plos.org
The kingdom Fungi is estimated to include 1.5 million or more species, playing key roles as
decomposers, mutualists, and parasites in every biome on the earth. To comprehensively …