Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi
The global bio-diversity of fungi has been extensively investigated and their species number
has been estimated. Notably, the development of molecular phylogeny has revealed an …
has been estimated. Notably, the development of molecular phylogeny has revealed an …
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
Forest tree growth is linked to mycorrhizal fungal composition and function across Europe
MA Anthony, TW Crowther, S Van Der Linde… - The ISME …, 2022 - academic.oup.com
Most trees form symbioses with ectomycorrhizal fungi (EMF) which influence access to
growth-limiting soil resources. Mesocosm experiments repeatedly show that EMF species …
growth-limiting soil resources. Mesocosm experiments repeatedly show that EMF species …
Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees
B Beckers, M Op De Beeck, N Weyens, W Boerjan… - Microbiome, 2017 - Springer
Background The plant microbiome represents one of the key determinants of plant health
and productivity by providing a plethora of functional capacities such as access to low …
and productivity by providing a plethora of functional capacities such as access to low …
Accurate estimation of fungal diversity and abundance through improved lineage-specific primers optimized for Illumina amplicon sequencing
While high-throughput sequencing methods are revolutionizing fungal ecology, recovering
accurate estimates of species richness and abundance has proven elusive. We sought to …
accurate estimates of species richness and abundance has proven elusive. We sought to …
Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees
M Urbanová, J Šnajdr, P Baldrian - Soil Biology and Biochemistry, 2015 - Elsevier
In forest ecosystems, trees represent the major primary producers and affect the chemical
composition and microbial processes in the ecosystem via specific litter chemistry and …
composition and microbial processes in the ecosystem via specific litter chemistry and …
Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing …
J Bengtsson‐Palme, M Ryberg… - Methods in ecology …, 2013 - Wiley Online Library
The nuclear ribosomal internal transcribed spacer (ITS) region is the primary choice for
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …
Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition
Microorganisms play a crucial role in the biological decomposition of plant litter in terrestrial
ecosystems. Due to the permanently changing litter quality during decomposition, studies of …
ecosystems. Due to the permanently changing litter quality during decomposition, studies of …
[PDF][PDF] Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
Rapid development of high-throughput (HTS) molecular identification methods has
revolutionized our knowledge about taxonomic diversity and ecology of fungi. However …
revolutionized our knowledge about taxonomic diversity and ecology of fungi. However …
High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples
The kingdom Fungi is estimated to include 1.5 million or more species, playing key roles as
decomposers, mutualists, and parasites in every biome on the earth. To comprehensively …
decomposers, mutualists, and parasites in every biome on the earth. To comprehensively …