Quantum chemistry calculations for metabolomics: Focus review

RM Borges, SM Colby, S Das, AS Edison… - Chemical …, 2021 - ACS Publications
A primary goal of metabolomics studies is to fully characterize the small-molecule
composition of complex biological and environmental samples. However, despite advances …

Modeling photoionization of aqueous DNA and its components

E Pluharova, P Slavicek… - Accounts of Chemical …, 2015 - ACS Publications
Conspectus Radiation damage to DNA is usually considered in terms of UVA and UVB
radiation. These ultraviolet rays, which are part of the solar spectrum, can indeed cause …

Calculations of pKa's and Redox Potentials of Nucleobases with Explicit Waters and Polarizable Continuum Solvation

B Thapa, HB Schlegel - The Journal of Physical Chemistry A, 2015 - ACS Publications
The SMD implicit solvation model augmented with one and four explicit water molecules
was used to calculate p K a's and redox potentials of N-methyl-substituted nucleic acid …

Determination of redox potentials for the watson− crick base pairs, DNA nucleosides, and relevant nucleoside analogues

CE Crespo-Hernández, DM Close, L Gorb… - The journal of …, 2007 - ACS Publications
Redox potentials for the DNA nucleobases and nucleosides, various relevant nucleoside
analogues, Watson− Crick base pairs, and seven organic dyes are presented based on …

Ab initio determination of the ionization potentials of DNA and RNA nucleobases

D Roca-Sanjuán, M Rubio, M Merchán… - The Journal of …, 2006 - pubs.aip.org
Quantum chemical high level ab initio coupled-cluster and multiconfigurational perturbation
methods have been used to compute vertical and adiabatic ionization potentials of the five …

Ionization energies of aqueous nucleic acids: Photoelectron spectroscopy of pyrimidine nucleosides and ab initio calculations

P Slavicek, B Winter, M Faubel… - Journal of the …, 2009 - ACS Publications
Vertical ionization energies of the nucleosides cytidine and deoxythymidine in water, the
lowest ones amounting in both cases to 8.3 eV, are obtained from photoelectron …

The guanine cation radical: Investigation of deprotonation states by ESR and DFT

A Adhikary, A Kumar, D Becker… - The Journal of Physical …, 2006 - ACS Publications
This work reports ESR studies that identify the favored site of deprotonation of the guanine
cation radical (G•+) in an aqueous medium at 77 K. Using ESR and UV− visible …

Effect of solvation on the vertical ionization energy of thymine: From microhydration to bulk

D Ghosh, O Isayev, LV Slipchenko… - The Journal of Physical …, 2011 - ACS Publications
The effect of hydration on the vertical ionization energy (VIE) of thymine was characterized
using equation-of-motion ionization potential coupled-cluster (EOM-IP-CCSD) and effective …

Adenine tautomers: relative stabilities, ionization energies, and mismatch with cytosine

C Fonseca Guerra, FM Bickelhaupt… - The Journal of …, 2006 - ACS Publications
In this study, we have investigated 12 tautomers of the DNA base adenine at the BP86/TZ2P
and BP86/QZ4P levels of density functional theory. The vertical and adiabatic ionization …

Scattering of electrons with aqueous biomaterials

S Parikh, D Chauhan, N Thakkar… - Radiation Physics and …, 2024 - Elsevier
The aqueous phase of DNA, which is more realistic phase due to the presence of H-bonds is
studied in this work for various molecular processes upon electron impact. We report …