Revisiting an important component of plant genomes: microsatellites

C Gao, X Ren, AS Mason, J Li, W Wang… - Functional Plant …, 2013 - CSIRO Publishing
Microsatellites are some of the most highly variable repetitive DNA tracts in genomes. Few
studies focus on whether the characteristic instability of microsatellites is linked to …

Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)

TK Mondal, SA Ganie - Gene, 2014 - Elsevier
Salinity is an important abiotic stress that affects agricultural production and productivity. It is
a complex trait that is regulated by different molecular mechanisms. miRNAs are non-coding …

Development and use of miRNA-derived SSR markers for the study of genetic diversity, population structure, and characterization of genotypes for breeding heat …

S Tyagi, A Kumar, T Gautam, R Pandey, S Rustgi… - PLoS …, 2021 - journals.plos.org
Heat stress is an important abiotic factor that limits wheat production globally, including
south-east Asia. The importance of micro (mi) RNAs in gene expression under various biotic …

Microsatellite resources of Eucalyptus: current status and future perspectives

M Sumathi, R Yasodha - Botanical studies, 2014 - Springer
Eucalyptus is the premier paper pulp, short rotation plantation species grown all over the
world. Genetic improvement programs integrating molecular marker tools are in progress in …

Analysis of the coding and non-coding RNA transcriptomes in response to bell pepper chilling

J Zuo, Y Wang, B Zhu, Y Luo, Q Wang… - International journal of …, 2018 - mdpi.com
Increasing evidence suggests that long non-coding RNAs (lncRNAs), circular RNAs
(circRNAs), and microRNAs (miRNAs) have roles during biotic and abiotic stress, though …

Genome wide identification, characterization and validation of novel miRNA-based SSR markers in pomegranate (Punica granatum L.)

PG Patil, NV Singh, S Parashuram, A Bohra… - … and molecular biology …, 2020 - Springer
A total of 17,439 mature miRNAs (~ 21 nt) earlier generated through RNA seq in the
pomegranate were used for in silico analysis. After complexity reduction, a total of 1922 …

Genome-wide development of novel miRNA-based microsatellite markers of rice (Oryza sativa) for genotyping applications

SA Ganie, TK Mondal - Molecular Breeding, 2015 - Springer
Rice (Oryza sativa L.) plays a crucial role in assuring food security to the world's population
and is recognized as a superior model plant of monocot crops. Molecular markers …

Network analysis of noncoding RNAs in pepper provides insights into fruit ripening control

J Zuo, Y Wang, B Zhu, Y Luo, Q Wang, L Gao - Scientific Reports, 2019 - nature.com
Pepper is an important vegetable worldwide and is a model plant for nonclimacteric fleshy
fruit ripening. Drastic visual changes and internal biochemical alterations are involved in fruit …

Abiotic Stress Responsive miRNA-Target Network and Related Markers (SNP, SSR) in Brassica juncea

I Singh, S Smita, DC Mishra, S Kumar… - Frontiers in plant …, 2017 - frontiersin.org
Abiotic stress is one of the major factors responsible for huge yield loss in crop plants.
MicroRNAs play a key role in adaptive responses of plants under abiotic stress conditions …

De novo Transcriptome Sequencing Reveals a Considerable Bias in the Incidence of Simple Sequence Repeats towards the Downstream of 'Pre-miRNAs' of Black …

N Joy, S Asha, V Mallika, EV Soniya - PLoS One, 2013 - journals.plos.org
Next generation sequencing has an advantageon transformational development of species
with limited available sequence data as it helps to decode the genome and transcriptome …