A practical guide to spatial transcriptomics

L Valihrach, D Zucha, P Abaffy, M Kubista - Molecular Aspects of Medicine, 2024 - Elsevier
Spatial transcriptomics is revolutionizing modern biology, offering researchers an
unprecedented ability to unravel intricate gene expression patterns within tissues. From …

Spatial mapping of Alzheimer's disease across genetic subtypes

A Nott, IR Holtman - Nature genetics, 2024 - nature.com
Alzheimer's disease is a complex, heterogeneous disorder with multiple genetic subtypes.
Spatial and single-cell gene expression analyses of these subtypes have provided new …

Spatial Transcriptomics: Biotechnologies, Computational Tools, and Neuroscience Applications

Q Wang, H Zhu, L Deng, S Xu, W Xie, M Li… - Small …, 2025 - Wiley Online Library
Spatial transcriptomics (ST) represents a revolutionary approach in molecular biology,
providing unprecedented insights into the spatial organization of gene expression within …

Pairpot: a database with real-time lasso-based analysis tailored for paired single-cell and spatial transcriptomics

Z Ruan, F Lin, Z Zhang, J Cao, W Xiang… - Nucleic Acids …, 2024 - academic.oup.com
Paired single-cell and spatially resolved transcriptomics (SRT) data supplement each other,
providing in-depth insights into biological processes and disease mechanisms. Previous …

Unraveling Alzheimer's disease: insights from single-cell sequencing and spatial transcriptomic

Y He, W Lu, X Zhou, J Mu, W Shen - Frontiers in Neurology, 2024 - frontiersin.org
Alzheimer's disease (AD) is a neurodegenerative disorder marked by cognitive decline,
primarily affecting memory and executive function. This review highlights recent …

Integration of Single-Cell and Spatial Transcriptomic Data Reveals Spatial Architecture and Potential Biomarkers in Alzheimer's Disease

X Fan, H Li - Molecular Neurobiology, 2024 - Springer
Alzheimer's disease (AD) is a complex neurodegenerative disorder characterized by the
gradual loss of neurons and the accumulation of amyloid plaques and neurofibrillary …

[HTML][HTML] A Systematic Overview of Single-Cell Transcriptomics Databases, their Use cases, and Limitations

MN Gondal, SUR Shah, AM Chinnaiyan, M Cieslik - ArXiv, 2024 - ncbi.nlm.nih.gov
Rapid advancements in high-throughput single-cell RNA-seq (scRNA-seq) technologies
and experimental protocols have led to the generation of vast amounts of genomic data that …

Integrating spatially-resolved transcriptomics data across tissues and individuals: challenges and opportunities

B Guo, W Ling, SH Kwon, P Panwar, S Ghazanfar… - ArXiv, 2024 - pmc.ncbi.nlm.nih.gov
Advances in spatially-resolved transcriptomics (SRT) technologies have propelled the
development of new computational analysis methods to unlock biological insights. As the …

Discovery of disease-associated cellular states using ResidPCA in single-cell RNA and ATAC sequencing data

S Carver, K Taraszka, S Groha, A Gusev - bioRxiv, 2024 - biorxiv.org
To enhance understanding of cellular heterogeneity and disease from single-cell
sequencing data, we introduce ResidPCA, a robust method for cell state identification that …

Modulation of the central nervous system immune response and neuroinflammation via Wnt signaling in health and neurodegenerative diseases

K Fang - ibrain, 2024 - Wiley Online Library
The immune response in the central nervous system (CNS) is a highly specialized and
tightly regulated process essential for maintaining neural health and protecting against …