A technical review of canonical correlation analysis for neuroscience applications

X Zhuang, Z Yang, D Cordes - Human brain mapping, 2020 - Wiley Online Library
Collecting comprehensive data sets of the same subject has become a standard in
neuroscience research and uncovering multivariate relationships among collected data sets …

Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry

F Zhang, K Wei, K Slowikowski, CY Fonseka… - Nature …, 2019 - nature.com
To define the cell populations that drive joint inflammation in rheumatoid arthritis (RA), we
applied single-cell RNA sequencing (scRNA-seq), mass cytometry, bulk RNA sequencing …

mixOmics: An R package for 'omics feature selection and multiple data integration

F Rohart, B Gautier, A Singh… - PLoS computational …, 2017 - journals.plos.org
The advent of high throughput technologies has led to a wealth of publicly available 'omics
data coming from different sources, such as transcriptomics, proteomics, metabolomics …

Microbial bile salt hydrolases mediate the efficacy of faecal microbiota transplant in the treatment of recurrent Clostridioides difficile infection

BH Mullish, JAK McDonald, A Pechlivanis, JR Allegretti… - Gut, 2019 - gut.bmj.com
Objective Faecal microbiota transplant (FMT) effectively treats recurrent Clostridioides
difficile infection (rCDI), but its mechanisms of action remain poorly defined. Certain bile …

Exploring the transfer of recent plant photosynthates to soil microbes: mycorrhizal pathway vs direct root exudation

C Kaiser, MR Kilburn, PL Clode, L Fuchslueger… - New …, 2015 - Wiley Online Library
Plants rapidly release photoassimilated carbon (C) to the soil via direct root exudation and
associated mycorrhizal fungi, with both pathways promoting plant nutrient availability. This …

Succession of microbial consortia in the developing infant gut microbiome

JE Koenig, A Spor, N Scalfone… - Proceedings of the …, 2011 - National Acad Sciences
The colonization process of the infant gut microbiome has been called chaotic, but this view
could reflect insufficient documentation of the factors affecting the microbiome. We …

Extendable and explainable deep learning for pan-cancer radiogenomics research

Q Liu, P Hu - Current opinion in chemical biology, 2022 - Elsevier
Radiogenomics is a field where medical images and genomic profiles are jointly analyzed to
answer critical clinical questions. Specifically, people want to identify non-invasive imaging …

Teaching mathematics with technology: A multidimensional analysis of teacher beliefs

D Thurm, B Barzel - Educational Studies in Mathematics, 2022 - Springer
Teacher self-efficacy beliefs, epistemological beliefs, and beliefs about teaching with
technology are regarded as crucial factors for teaching mathematics with technology …

Soil variability and quantification based on Sentinel-2 and Landsat-8 bare soil images: A comparison

NEQ Silvero, JAM Demattê, MTA Amorim… - Remote Sensing of …, 2021 - Elsevier
There is a worldwide need for detailed spatial information to support soil mapping, mainly in
the tropics, where main agricultural areas are concentrated. In this line, satellite images are …

Metabolomic and transcriptomic stress response of Escherichia coli

S Jozefczuk, S Klie, G Catchpole… - Molecular systems …, 2010 - embopress.org
Environmental fluctuations lead to a rapid adjustment of the physiology of Escherichia coli,
necessitating changes on every level of the underlying cellular and molecular network. Thus …