Soil viral diversity, ecology and climate change

JK Jansson, R Wu - Nature Reviews Microbiology, 2023 - nature.com
Soil viruses are highly abundant and have important roles in the regulation of host dynamics
and soil ecology. Climate change is resulting in unprecedented changes to soil ecosystems …

The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks

Nature Microbiology, 2020 - nature.com
Virus taxonomy emerged as a discipline in the middle of the twentieth century. Traditionally,
classification by virus taxonomists has been focussed on the grouping of relatively closely …

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata

AP Camargo, S Nayfach, IMA Chen… - Nucleic acids …, 2023 - academic.oup.com
Viruses are widely recognized as critical members of all microbiomes. Metagenomics
enables large-scale exploration of the global virosphere, progressively revealing the …

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome

AA Zayed, JM Wainaina, G Dominguez-Huerta… - Science, 2022 - science.org
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

J Guo, B Bolduc, AA Zayed, A Varsani… - Microbiome, 2021 - Springer
Background Viruses are a significant player in many biosphere and human ecosystems, but
most signals remain “hidden” in metagenomic/metatranscriptomic sequence datasets due to …

A roadmap for genome-based phage taxonomy

D Turner, AM Kropinski, EM Adriaenssens - Viruses, 2021 - mdpi.com
Bacteriophage (phage) taxonomy has been in flux since its inception over four decades ago.
Genome sequencing has put pressure on the classification system and recent years have …

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

S Nayfach, AP Camargo, F Schulz… - Nature …, 2021 - nature.com
Millions of new viral sequences have been identified from metagenomes, but the quality and
completeness of these sequences vary considerably. Here we present CheckV, an …

[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages

U Neri, YI Wolf, S Roux, AP Camargo, B Lee… - Cell, 2022 - cell.com
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses

S Roux, D Páez-Espino, IMA Chen… - Nucleic acids …, 2021 - academic.oup.com
Viruses are integral components of all ecosystems and microbiomes on Earth. Through
pervasive infections of their cellular hosts, viruses can reshape microbial community …

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

PJ Walker, SG Siddell, EJ Lefkowitz, AR Mushegian… - 2020 - Springer
This article reports the changes to virus classification and taxonomy approved and ratified by
the International Committee on Taxonomy of Viruses (ICTV) in March 2020. The entire ICTV …