A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
[HTML][HTML] Towards monitoring of antimicrobial resistance in the environment: for what reasons, how to implement it, and what are the data needs?
J Bengtsson-Palme, A Abramova, TU Berendonk… - Environment …, 2023 - Elsevier
Antimicrobial resistance (AMR) is a global threat to human and animal health and well-
being. To understand AMR dynamics, it is important to monitor resistant bacteria and …
being. To understand AMR dynamics, it is important to monitor resistant bacteria and …
[HTML][HTML] A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin… - Cell, 2021 - cell.com
We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60
cities over 3 years, representing the first systematic, worldwide catalog of the urban …
cities over 3 years, representing the first systematic, worldwide catalog of the urban …
A systematic review of antibiotics and antibiotic resistance genes in estuarine and coastal environments
D Zheng, G Yin, M Liu, C Chen, Y Jiang, L Hou… - Science of the Total …, 2021 - Elsevier
Antibiotics and antibiotic resistance genes (ARGs) are prevalent in estuarine and coastal
environments due to substantial terrestrial input, aquaculture effluent, and sewage …
environments due to substantial terrestrial input, aquaculture effluent, and sewage …
Deciphering the mobility and bacterial hosts of antibiotic resistance genes under antibiotic selection pressure by metagenomic assembly and binning approaches
The presence of antibiotics can exert significant selection pressure on the emergence and
spread of antibiotic resistance genes (ARGs) and antibiotic resistant bacteria (ARB) …
spread of antibiotic resistance genes (ARGs) and antibiotic resistant bacteria (ARB) …
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes
Background Bacterial communities in humans, animals, and the external environment
maintain a large collection of antibiotic resistance genes (ARGs). However, few of these …
maintain a large collection of antibiotic resistance genes (ARGs). However, few of these …
Globally distributed mining-impacted environments are underexplored hotspots of multidrug resistance genes
Mining is among the human activities with widest environmental impacts, and mining-
impacted environments are characterized by high levels of metals that can co-select for …
impacted environments are characterized by high levels of metals that can co-select for …
Pathogenomics of Emerging Campylobacter Species
Campylobacter is among the four main causes of gastroenteritis worldwide and has
increased in both developed and developing countries over the last 10 years. The vast …
increased in both developed and developing countries over the last 10 years. The vast …
An assessment of resistome and mobilome in wastewater treatment plants through temporal and spatial metagenomic analysis
Wastewater treatment plants (WWTPs) are regarded as critical points in disseminating
antibiotic resistance genes (ARGs). In particular, the discharging effluents from WWTPs …
antibiotic resistance genes (ARGs). In particular, the discharging effluents from WWTPs …
Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes
In the fight to limit the global spread of antibiotic resistance, the assembly of environmental
metagenomes has the potential to provide rich contextual information (eg, taxonomic hosts …
metagenomes has the potential to provide rich contextual information (eg, taxonomic hosts …