Electrostatic interactions in protein structure, folding, binding, and condensation
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …
specific electrostatic interactions, impart important properties to proteins. Modulation of the …
Eukaryotic transcription factors: paradigms of protein intrinsic disorder
Gene-specific transcription factors (TFs) are key regulatory components of signaling
pathways, controlling, for example, cell growth, development, and stress responses. Their …
pathways, controlling, for example, cell growth, development, and stress responses. Their …
Negatively charged, intrinsically disordered regions can accelerate target search by DNA-binding proteins
In eukaryotes, many DNA/RNA-binding proteins possess intrinsically disordered regions
(IDRs) with large negative charge, some of which involve a consecutive sequence of …
(IDRs) with large negative charge, some of which involve a consecutive sequence of …
Simple methods and rational design for enhancing aptamer sensitivity and specificity
P Kalra, A Dhiman, WC Cho, JG Bruno… - Frontiers in molecular …, 2018 - frontiersin.org
Aptamers are structured nucleic acid molecules that can bind to their targets with high affinity
and specificity. However, conventional SELEX (Systematic Evolution of Ligands by …
and specificity. However, conventional SELEX (Systematic Evolution of Ligands by …
Structure and RNA-binding of the helically extended Roquin CCCH-type zinc finger
JN Tants, L Oberstrass, JE Weigand… - Nucleic Acids …, 2024 - academic.oup.com
Zinc finger (ZnF) domains appear in a pool of structural contexts and despite their small size
achieve varying target specificities, covering single-stranded and double-stranded DNA and …
achieve varying target specificities, covering single-stranded and double-stranded DNA and …
Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins
Despite their diverse biochemical characteristics and functions, all DNA-binding proteins
share the ability to accurately locate their target sites among the vast excess of non-target …
share the ability to accurately locate their target sites among the vast excess of non-target …
Protein diffusion along Protein and DNA lattices: role of electrostatics and disordered regions
Diffusion is a pervasive process present in a broad spectrum of cellular reactions. Its
mathematical description has existed for nearly two centuries and permits the construction of …
mathematical description has existed for nearly two centuries and permits the construction of …
[HTML][HTML] Dynamics in Cre-loxP site-specific recombination
MP Foster, MJ Benedek, TD Billings… - Current opinion in …, 2024 - Elsevier
Cre recombinase is a phage-derived enzyme that has found utility for precise manipulation
of DNA sequences. Cre recognizes and recombines pairs of loxP sequences characterized …
of DNA sequences. Cre recognizes and recombines pairs of loxP sequences characterized …
Poly (ADP-ribose) polymerase 1 searches DNA via a 'monkey bar'mechanism
Poly (ADP-ribose) polymerase 1 (PARP1) is both a first responder to DNA damage and a
chromatin architectural protein. How PARP1 rapidly finds DNA damage sites in the context …
chromatin architectural protein. How PARP1 rapidly finds DNA damage sites in the context …
Foldamer tertiary structure through sequence-guided protein backbone alteration
Conspectus The prospect of recreating the complex structural hierarchy of protein folding in
synthetic oligomers with backbones that are artificial in covalent structure (“foldamers”) has …
synthetic oligomers with backbones that are artificial in covalent structure (“foldamers”) has …