SNP discovery and development of a high-density genotyping array for sunflower

E Bachlava, CA Taylor, S Tang, JE Bowers, JR Mandel… - PloS one, 2012 - journals.plos.org
Recent advances in next-generation DNA sequencing technologies have made possible the
development of high-throughput SNP genotyping platforms that allow for the simultaneous …

ChromaPipe: a pipeline for analysis, quality control and management for a DNA sequencing facility

TD Otto, EA Vasconcellos, LHF Gomes, AS Moreira… - 2008 - arca.fiocruz.br
Optimizing and monitoring the data flow in high-throughput sequencing facilities is important
for data input and output, for tracking the status of results for the users of the facility, and to …

Sequence Analysis of Bacterial Artificial Chromosome Clones from the Apospory-Specific Genomic Region of Pennisetum and Cenchrus

JA Conner, S Goel, G Gunawan… - Plant …, 2008 - academic.oup.com
Apomixis, asexual reproduction through seed, is widespread among angiosperm families.
Gametophytic apomixis in Pennisetum squamulatum and Cenchrus ciliaris is controlled by …

A functional genomics investigation of allelochemical biosynthesis in Sorghum bicolor root hairs

SR Baerson, FE Dayan, AM Rimando… - Journal of Biological …, 2008 - ASBMB
Sorghum is considered to be one of the more allelopathic crop species, producing
phytotoxins such as the potent benzoquinone sorgoleone (2-hydroxy-5-methoxy-3-[(Z, Z) …

Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species

WW Lorenz, S Ayyampalayam, JM Bordeaux… - Tree Genetics & …, 2012 - Springer
Conifers comprise an ancient and widespread plant lineage of enormous commercial and
ecological value. However, compared to model woody angiosperms, such as Populus and …

cDNA Sequences for Transcription Factors and Signaling Proteins of the Hemichordate Saccoglossus kowalevskii: Efficacy of the Expressed Sequence Tag (EST) …

RM Freeman Jr, M Wu… - The Biological …, 2008 - journals.uchicago.edu
We describe a collection of expressed sequence tags (ESTs) for Saccoglossus kowalevskii,
a direct-developing hemichordate valuable for evolutionary comparisons with chordates …

Characterization of Apomictic BC7 and BC8 Pearl Millet: Meiotic Chromosome Behavior and Construction of an ASGR‐carrier Chromosome‐specific Library

M Singh, JA Conner, YJ Zeng, WW Hanna… - Crop …, 2010 - Wiley Online Library
Apospory in Pennisetum squamulatum Fresen is inherited as a single‐locus dominant trait.
Molecular analysis has identified the apospory‐specific genomic region (ASGR), a large …

Transcriptional profiling of stage specific gene expression in the parasitic ciliate Ichthyophthirius multifiliis

DM Cassidy-Hanley, MM Cordonnier-Pratt… - Molecular and …, 2011 - Elsevier
The parasitic ciliate, Ichthyophthirius multifiliis (Ich), is among the most important protozoan
pathogens of freshwater fish. Ichthyophthirius cannot be grown in cell culture, and the …

[图书][B] Handbook of hidden Markov models in bioinformatics

M Gollery - 2008 - taylorfrancis.com
Demonstrating that many useful resources, such as databases, can benefit most
bioinformatics projects, the Handbook of Hidden Markov Models in Bioinformatics focuses …

ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs)

C Liang, G Wang, L Liu, G Ji, L Fang, Y Liu, K Carter… - BMC genomics, 2007 - Springer
Background With the advent of low-cost, high-throughput sequencing, the amount of public
domain Expressed Sequence Tag (EST) sequence data available for both model and non …