Evolution of multisubunit RNA polymerases in the three domains of life

F Werner, D Grohmann - Nature Reviews Microbiology, 2011 - nature.com
RNA polymerases (RNAPs) carry out transcription in all living organisms. All multisubunit
RNAPs are derived from a common ancestor, a fact that becomes apparent from their amino …

RNA polymerase II transcription: structure and mechanism

X Liu, DA Bushnell, RD Kornberg - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
A minimal RNA polymerase II (pol II) transcription system comprises the polymerase and five
general transcription factors (GTFs) TFIIB,-D,-E,-F, and-H. The addition of Mediator enables …

Crystal structure of the 14-subunit RNA polymerase I

C Fernández-Tornero, M Moreno-Morcillo, UJ Rashid… - Nature, 2013 - nature.com
Protein biosynthesis depends on the availability of ribosomes, which in turn relies on
ribosomal RNA production. In eukaryotes, this process is carried out by RNA polymerase I …

Fitness‐compensatory mutations in rifampicin‐resistant RNA polymerase

G Brandis, M Wrande, L Liljas… - Molecular …, 2012 - Wiley Online Library
Mutations in rpoB (RNA polymerase β‐subunit) can cause high‐level resistance to
rifampicin, an important first‐line drug against tuberculosis. Most rifampicin‐resistant (RifR) …

Millisecond dynamics of RNA polymerase II translocation at atomic resolution

DA Silva, DR Weiss, F Pardo Avila… - Proceedings of the …, 2014 - National Acad Sciences
Transcription is a central step in gene expression, in which the DNA template is processively
read by RNA polymerase II (Pol II), synthesizing a complementary messenger RNA …

[HTML][HTML] Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism

M Dangkulwanich, T Ishibashi, S Liu, ML Kireeva… - Elife, 2013 - elifesciences.org
During transcription elongation, RNA polymerase has been assumed to attain equilibrium
between pre-and post-translocated states rapidly relative to the subsequent catalysis. Under …

Role of the RNA polymerase trigger loop in catalysis and pausing

J Zhang, M Palangat, R Landick - Nature structural & molecular biology, 2010 - nature.com
The trigger loop (TL) is a polymorphous component of RNA polymerase (RNAP) that makes
direct substrate contacts and promotes nucleotide addition when folded into an α-helical …

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

S Tagami, S Sekine, T Kumarevel, N Hino… - Nature, 2010 - nature.com
The multi-subunit DNA-dependent RNA polymerase (RNAP) is the principal enzyme of
transcription for gene expression. Transcription is regulated by various transcription factors …

Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II

LT Da, D Wang, X Huang - Journal of the American Chemical …, 2012 - ACS Publications
Pyrophosphate ion (PPi) release after nucleotide incorporation is a necessary step for RNA
polymerase II (pol II) to enter the next nucleotide addition cycle during transcription …

Molecular evolution of multisubunit RNA polymerases: structural analysis

WJ Lane, SA Darst - Journal of molecular biology, 2010 - Elsevier
Comprehensive multiple sequence alignments of the multisubunit DNA-dependent RNA
polymerase (RNAP) large subunits, including the bacterial β and β′ subunits and their …