[HTML][HTML] De novo molecular design and generative models

J Meyers, B Fabian, N Brown - Drug discovery today, 2021 - Elsevier
Molecular design strategies are integral to therapeutic progress in drug discovery.
Computational approaches for de novo molecular design have been developed over the …

Artificial intelligence in drug discovery: recent advances and future perspectives

J Jiménez-Luna, F Grisoni, N Weskamp… - Expert opinion on drug …, 2021 - Taylor & Francis
Introduction: Artificial intelligence (AI) has inspired computer-aided drug discovery. The
widespread adoption of machine learning, in particular deep learning, in multiple scientific …

A 3D generative model for structure-based drug design

S Luo, J Guan, J Ma, J Peng - Advances in Neural …, 2021 - proceedings.neurips.cc
We study a fundamental problem in structure-based drug design---generating molecules
that bind to specific protein binding sites. While we have witnessed the great success of …

Advances in de novo drug design: from conventional to machine learning methods

VD Mouchlis, A Afantitis, A Serra, M Fratello… - International journal of …, 2021 - mdpi.com
De novo drug design is a computational approach that generates novel molecular structures
from atomic building blocks with no a priori relationships. Conventional methods include …

Deep learning for molecular design—a review of the state of the art

DC Elton, Z Boukouvalas, MD Fuge… - … Systems Design & …, 2019 - pubs.rsc.org
In the space of only a few years, deep generative modeling has revolutionized how we think
of artificial creativity, yielding autonomous systems which produce original images, music …

[HTML][HTML] Structure-based drug design with geometric deep learning

C Isert, K Atz, G Schneider - Current Opinion in Structural Biology, 2023 - Elsevier
Abstract Structure-based drug design uses three-dimensional geometric information of
macromolecules, such as proteins or nucleic acids, to identify suitable ligands. Geometric …

REINVENT 2.0: an AI tool for de novo drug design

T Blaschke, J Arús-Pous, H Chen… - Journal of chemical …, 2020 - ACS Publications
In the past few years, we have witnessed a renaissance of the field of molecular de novo
drug design. The advancements in deep learning and artificial intelligence (AI) have …

Generative deep learning for targeted compound design

T Sousa, J Correia, V Pereira… - Journal of Chemical …, 2021 - ACS Publications
In the past few years, de novo molecular design has increasingly been using generative
models from the emergent field of Deep Learning, proposing novel compounds that are …

Generating 3D molecules conditional on receptor binding sites with deep generative models

M Ragoza, T Masuda, DR Koes - Chemical science, 2022 - pubs.rsc.org
The goal of structure-based drug discovery is to find small molecules that bind to a given
target protein. Deep learning has been used to generate drug-like molecules with certain …

3d equivariant diffusion for target-aware molecule generation and affinity prediction

J Guan, WW Qian, X Peng, Y Su, J Peng… - arXiv preprint arXiv …, 2023 - arxiv.org
Rich data and powerful machine learning models allow us to design drugs for a specific
protein target\textit {in silico}. Recently, the inclusion of 3D structures during targeted drug …