Applications of artificial neural networks in microorganism image analysis: a comprehensive review from conventional multilayer perceptron to popular convolutional …

J Zhang, C Li, Y Yin, J Zhang, M Grzegorzek - Artificial Intelligence Review, 2023 - Springer
Microorganisms are widely distributed in the human daily living environment. They play an
essential role in environmental pollution control, disease prevention and treatment, and food …

Hybridization chain reaction: a versatile molecular tool for biosensing, bioimaging, and biomedicine

S Bi, S Yue, S Zhang - Chemical Society Reviews, 2017 - pubs.rsc.org
Developing powerful, simple and low-cost DNA amplification techniques is of great
significance to bioanalysis and biomedical research. Thus far, many signal amplification …

Isolation of an archaeon at the prokaryote–eukaryote interface

H Imachi, MK Nobu, N Nakahara, Y Morono… - Nature, 2020 - nature.com
The origin of eukaryotes remains unclear,,–. Current data suggest that eukaryotes may have
emerged from an archaeal lineage known as 'Asgard'archaea,. Despite the eukaryote-like …

LCU-Net: A novel low-cost U-Net for environmental microorganism image segmentation

J Zhang, C Li, S Kosov, M Grzegorzek, K Shirahama… - Pattern Recognition, 2021 - Elsevier
In this paper, we propose a novel Low-cost U-Net (LCU-Net) for the Environmental
Microorganism (EM) image segmentation task to assist microbiologists in detecting and …

Spatial metabolomics of in situ host–microbe interactions at the micrometre scale

B Geier, EM Sogin, D Michellod, M Janda… - Nature …, 2020 - nature.com
Spatial metabolomics describes the location and chemistry of small molecules involved in
metabolic phenotypes, defence molecules and chemical interactions in natural communities …

Basic principles and recent advances in magnetic cell separation

M Frenea-Robin, J Marchalot - Magnetochemistry, 2022 - mdpi.com
Magnetic cell separation has become a key methodology for the isolation of target cell
populations from biological suspensions, covering a wide spectrum of applications from …

The recent development of hybridization chain reaction strategies in biosensors

C Zhang, J Chen, R Sun, Z Huang, Z Luo, C Zhou… - ACS …, 2020 - ACS Publications
With the continuous development of biosensors, researchers have focused increasing
attention on various signal amplification strategies to pursue superior performance for more …

DNA integrated nanostructures for optical-based detection of foodborne contaminants

M Dadmehr, EA Sangachin, F Bazzi, J Li… - TrAC Trends in Analytical …, 2024 - Elsevier
Abstract Development of food detection strategies provides chances for the determination of
contaminants in foodstuffs. Optical detection approaches which are based on light …

Mapping a multiplexed zoo of mRNA expression

HMT Choi, CR Calvert, N Husain, D Huss… - …, 2016 - journals.biologists.com
In situ hybridization methods are used across the biological sciences to map mRNA
expression within intact specimens. Multiplexed experiments, in which multiple target …

Exposing the three-dimensional biogeography and metabolic states of pathogens in cystic fibrosis sputum via hydrogel embedding, clearing, and rRNA labeling

WH DePas, R Starwalt-Lee, L Van Sambeek… - MBio, 2016 - Am Soc Microbiol
Physiological resistance to antibiotics confounds the treatment of many chronic bacterial
infections, motivating researchers to identify novel therapeutic approaches. To do this …