Detecting signatures of positive selection in non-model species using genomic data

H Weigand, F Leese - Zoological journal of the Linnean Society, 2018 - academic.oup.com
Understanding how natural selection shapes genetic variation in populations is of
paramount importance in evolutionary biology. Affordable high-throughput sequencing now …

A meta-assembly of selection signatures in cattle

IAS Randhawa, MS Khatkar, PC Thomson… - PloS one, 2016 - journals.plos.org
Since domestication, significant genetic improvement has been achieved for many traits of
commercial importance in cattle, including adaptation, appearance and production. In …

Assessing genomic diversity and signatures of selection in Original Braunvieh cattle using whole-genome sequencing data

M Bhati, NK Kadri, D Crysnanto, H Pausch - BMC genomics, 2020 - Springer
Background Autochthonous cattle breeds are an important source of genetic variation
because they might carry alleles that enable them to adapt to local environment and food …

Characteristics of runs of homozygosity in selected cattle breeds maintained in Poland

T Szmatoła, A Gurgul, K Ropka-Molik, I Jasielczuk… - Livestock Science, 2016 - Elsevier
Runs of homozygosity (ROH) are defined as contiguous homozygous regions of the genome
where the two haplotypes inherited from the parents are identical. It has been shown that the …

Genome‐wide scan of selection signatures in Dehong humped cattle for heat tolerance and disease resistance

R Li, C Li, H Chen, R Li, Q Chong, H Xiao… - Animal …, 2020 - Wiley Online Library
Dehong humped cattle (DHH) is an indigenous zebu breed from southwestern China that
possesses characteristics of heat tolerance and strong disease resistance and adapts well …

[HTML][HTML] Genotyping-by-sequencing performance in selected livestock species

A Gurgul, A Miksza-Cybulska, T Szmatoła, I Jasielczuk… - Genomics, 2019 - Elsevier
Application of next generation sequencing for large scale genotyping in livestock is limited
by high costs and challenging data analysis process. However, available restriction enzyme …

Genome-wide DNA methylation profiles reveal novel candidate genes associated with meat quality at different age stages in hens

M Zhang, FB Yan, F Li, KR Jiang, DH Li, RL Han… - Scientific Reports, 2017 - nature.com
Poultry meat quality is associated with breed, age, tissue and other factors. Many previous
studies have focused on distinct breeds; however, little is known regarding the epigenetic …

Genome‐wide detection of signatures of selection in three Valdostana cattle populations

S Mastrangelo, S Ben Jemaa, E Ciani… - Journal of Animal …, 2020 - Wiley Online Library
The Valdostana is a local dual purpose cattle breed developed in Italy. Three populations
are recognized within this breed, based on coat colour, production level, morphology and …

Genome-wide diversity and global migration patterns in dromedaries follow ancient caravan routes

S Lado, JP Elbers, A Doskocil, D Scaglione… - Communications …, 2020 - nature.com
Dromedaries have been essential for the prosperity of civilizations in arid environments and
the dispersal of humans, goods and cultures along ancient, cross-continental trading routes …

Genome-wide scan reveals genetic divergence and diverse adaptive selection in Chinese local cattle

L Xu, L Yang, B Zhu, W Zhang, Z Wang, Y Chen… - BMC genomics, 2019 - Springer
Background Understanding the population structure and genetic bases of well-adapted
cattle breeds to local environments is one of the most essential tasks to develop appropriate …