Functional mechanisms of microsatellite DNA in eukaryotic genomes

ATM Bagshaw - Genome biology and evolution, 2017 - academic.oup.com
Microsatellite repeat DNA is best known for its length mutability, which is implicated in
several neurological diseases and cancers, and often exploited as a genetic marker. Less …

High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation

I Georgakopoulos-Soares, CSY Chan, N Ahituv… - Genome biology, 2022 - Springer
The most stable structure of DNA is the canonical right-handed double helix termed B DNA.
However, certain environments and sequence motifs favor alternative conformations, termed …

Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements

S Sawaya, A Bagshaw, E Buschiazzo, P Kumar… - PloS one, 2013 - journals.plos.org
Tandem repeats are genomic elements that are prone to changes in repeat number and are
thus often polymorphic. These sequences are found at a high density at the start of human …

Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana

MO Press, RC McCoy, AN Hall, JM Akey… - Genome …, 2018 - genome.cshlp.org
Short tandem repeat (STR) mutations may comprise more than half of the mutations in
eukaryotic coding DNA, yet STR variation is rarely examined as a contributor to complex …

Novel implications of a strictly monomorphic (GCC) repeat in the human PRKACB gene

S Khamse, Z Jafarian, A Bozorgmehr, M Tavakoli… - Scientific reports, 2021 - nature.com
Abstract PRKACB (Protein Kinase CAMP-Activated Catalytic Subunit Beta) is predominantly
expressed in the brain, and regulation of this gene links to neuroprotective effects against …

Exceptional expansion and conservation of a CT‐repeat complex in the core promoter of PAXBP1 in primates

S Mohammadparast, H Bayat… - American journal of …, 2014 - Wiley Online Library
Adaptive evolution may be linked with the genomic distribution and function of short tandem
repeats (STRs). Proximity of the core promoter STRs to the+ 1 transcription start site (TSS) …

Quality and quantity of genetic relatedness data affect the analysis of social structure

V Foroughirad, AL Levengood, J Mann… - Molecular ecology …, 2019 - Wiley Online Library
Kinship plays a fundamental role in the evolution of social systems and is considered a key
driver of group living. To understand the role of kinship in the formation and maintenance of …

Core promoter short tandem repeats as evolutionary switch codes for primate speciation

M Ohadi, E Valipour… - American journal of …, 2015 - Wiley Online Library
Alteration in gene expression levels underlies many of the phenotypic differences across
species. Because of their highly mutable nature, proximity to the+ 1 transcription start site …

STaRRRT: a table of short tandem repeats in regulatory regions of the human genome

KA Bolton, JP Ross, DM Grice, NA Bowden… - BMC genomics, 2013 - Springer
Abstract Background Tandem repeats (TRs) are unstable regions commonly found within
genomes that have consequences for evolution and disease. In humans, polymorphic TRs …

Functional variations modulating PRKCA expression and alternative splicing predispose to multiple sclerosis

EM Paraboschi, V Rimoldi, G Solda… - Human molecular …, 2014 - academic.oup.com
The protein kinase C alpha (PRKCA) gene, encoding a Th17-cell-selective kinase, was
repeatedly associated with multiple sclerosis (MS), but the underlying pathogenic …