Population cycles and outbreaks of small rodents: ten essential questions we still need to solve

HP Andreassen, J Sundell, F Ecke, S Halle… - Oecologia, 2021 - Springer
Most small rodent populations in the world have fascinating population dynamics. In the
northern hemisphere, voles and lemmings tend to show population cycles with regular …

[HTML][HTML] Metagenomics meets time series analysis: unraveling microbial community dynamics

K Faust, L Lahti, D Gonze, WM De Vos… - Current opinion in …, 2015 - Elsevier
Highlights•A wealth of longitudinal data gives insights into microbial ecosystem dynamics.•
Longitudinal analysis can uncover periodicity, irregularities and alternative states.•Intrinsic …

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

N Habib, Y Li, M Heidenreich, L Swiech… - Science, 2016 - science.org
Single-cell RNA sequencing (RNA-Seq) provides rich information about cell types and
states. However, it is difficult to capture rare dynamic processes, such as adult …

Detecting causality in complex ecosystems

G Sugihara, R May, H Ye, C Hsieh, E Deyle, M Fogarty… - science, 2012 - science.org
Identifying causal networks is important for effective policy and management
recommendations on climate, epidemiology, financial regulation, and much else. We …

Equation-free mechanistic ecosystem forecasting using empirical dynamic modeling

H Ye, RJ Beamish, SM Glaser… - Proceedings of the …, 2015 - National Acad Sciences
It is well known that current equilibrium-based models fall short as predictive descriptions of
natural ecosystems, and particularly of fisheries systems that exhibit nonlinear dynamics. For …

Empirical dynamic modeling for beginners

CW Chang, M Ushio, C Hsieh - Ecological research, 2017 - Springer
Natural systems are often complex and dynamic (ie nonlinear), making them difficult to
understand using linear statistical approaches. Linear approaches are fundamentally based …

Why fishing magnifies fluctuations in fish abundance

CNK Anderson, C Hsieh, SA Sandin, R Hewitt… - Nature, 2008 - nature.com
It is now clear that fished populations can fluctuate more than unharvested stocks. However,
it is not clear why. Here we distinguish among three major competing mechanisms for this …

Generalized theorems for nonlinear state space reconstruction

ER Deyle, G Sugihara - Plos one, 2011 - journals.plos.org
Takens' theorem (1981) shows how lagged variables of a single time series can be used as
proxy variables to reconstruct an attractor for an underlying dynamic process. State space …

Spatial convergent cross mapping to detect causal relationships from short time series

AT Clark, H Ye, F Isbell, ER Deyle, J Cowles… - Ecology, 2015 - Wiley Online Library
Recent developments in complex systems analysis have led to new techniques for detecting
causal relationships using relatively short time series, on the order of 30 sequential …

[图书][B] Applications of circular statistics in plant phenology: a case studies approach

LPC Morellato, LF Alberti, IL Hudson - 2010 - Springer
Phenology is the study of recurring biological events and its relationship to climate. Circular
statistics is an area of statistics not very much used by ecologists nor by other researchers …