Computational Experiments in Computer Science Research: A Literature Survey

P Landeta-López, C Guevara-Vega - IEEE Access, 2024 - ieeexplore.ieee.org
Computational experiments have been important since the 70s to find solutions to problems
using computers, and even more now with the advancement of technology, especially …

Phylogenetic network-assisted rooting of unrooted gene trees

J Tiuryn, N Rutecka, P Górecki - Journal of Combinatorial Optimization, 2024 - Springer
Gene trees inferred from molecular sequence alignments are typically unrooted, and
determining the most credible rooting edge is a classical problem in computational biology …

Rooting gene trees via phylogenetic networks

J Tiuryn, N Rutecka, P Górecki - International Computing and …, 2022 - Springer
Gene trees inferred from alignments of molecular sequences are usually unrooted. Since the
root of a gene tree is often the desired property, one of the most classical problems in …

Inferring time-consistent and well-supported horizontal gene transfers

A Mykowiecka, A Muszewska… - 2018 IEEE International …, 2018 - ieeexplore.ieee.org
The evolution of gene families is a complicated process that does not always reflect the
evolution of the species they come from. These differences between genes and species …

[PDF][PDF] Inference of Credible Associations between Genes and Genomes

A Mykowiecka - 2022 - repozytorium.uw.edu.pl
Hypothesis of the course of gene and species evolution can be represented as a
phylogenetic tree, which illustrates the ancestor–descendant relationships. Events such as …

The Clade Displacement Index: how to detect horizontal gene transfers in unrooted gene trees

M Aleksander Ciach - bioRxiv, 2021 - biorxiv.org
While most genes of any organism are inherited vertically-ie from its parent organisms-
sometimes they can be exchanged between unrelated species in a process known as the …

[PDF][PDF] Rekonstrukcja Wiarygodnych Relacji Między Genami a Genomami

A Mykowiecka - mimuw.edu.pl
Filogenetyka, według najbardziej ogólnej definicji, jest dziedziną zajmującą się badaniem
historii ewolucji i związków między pojedynczymi osobnikami, grupami organizmów lub …