Clustering of high throughput gene expression data

H Pirim, B Ekşioğlu, AD Perkins, Ç Yüceer - Computers & operations …, 2012 - Elsevier
High throughput biological data need to be processed, analyzed, and interpreted to address
problems in life sciences. Bioinformatics, computational biology, and systems biology deal …

[HTML][HTML] A scaleable projection‐based branch‐and‐cut algorithm for the p‐center problem

E Gaar, M Sinnl - European Journal of Operational Research, 2022 - Elsevier
The p-center problem (pCP) is a fundamental problem in location science, where we are
given customer demand points and possible facility locations, and we want to choose p of …

A Simple but Powerful Heuristic Method for Accelerating -Means Clustering of Large-Scale Data in Life Science

K Ichikawa, S Morishita - IEEE/ACM transactions on …, 2014 - ieeexplore.ieee.org
K-means clustering has been widely used to gain insight into biological systems from large-
scale life science data. To quantify the similarities among biological data sets, Pearson …

Automated generation of user-tailored and time-sensitive music playlists

M Furini, J Martini, M Montangero - 2019 16th IEEE Annual …, 2019 - ieeexplore.ieee.org
Streaming music platforms have changed the way people listen to music. Today, we can
access to millions of songs with a simple internet-connected device. The drawback is that …

CLIC: clustering analysis of large microarray datasets with individual dimension-based clustering

T Yun, T Hwang, K Cha, GS Yi - Nucleic acids research, 2010 - academic.oup.com
Large microarray data sets have recently become common. However, most available
clustering methods do not easily handle large microarray data sets due to their very large …

Finding best algorithmic components for clustering microarray data

M Vukićević, K Kirchner, B Delibašić… - … and information systems, 2013 - Springer
The analysis of microarray data is fundamental to microbiology. Although clustering has long
been realized as central to the discovery of gene functions and disease diagnostic …

Amic@: all microarray clusterings@ once

F Geraci, M Pellegrini, ME Renda - Nucleic acids research, 2008 - academic.oup.com
Abstract The AMIC@ Web Server offers a light-weight multi-method clustering engine for
microarray gene-expression data. AMIC@ is a highly interactive tool that stresses user …

Internal evaluation measures as proxies for external indices in clustering gene expression data

M Vukicevic, B Delibasic, M Jovanovic… - 2011 IEEE …, 2011 - ieeexplore.ieee.org
Several external indices that use information not present in the dataset were shown to be
useful for evaluation of representative based clustering algorithms. However, such …

Clustering techniques for revealing gene expression patterns

C Gallo, V Capozzi - … of Information Science and Technology, Third …, 2015 - igi-global.com
The possible applications of modeling and simulation in the field of bioinformatics are very
extensive, ranging from understanding basic metabolic paths to exploring genetic variability …

Ensemble clustering for biological datasets

H Pirim, SE Seker, H Pérez-Sánchez - Bioinformatics, 2012 - books.google.com
Recent technologies and tools generated excessive data in bioinformatics domain. For
example, microarrays measure expression levels of ten thousands of genes simultaneously …