Protein carbonylation: emerging roles in plant redox biology and future prospects

AJ Tola, A Jaballi, TD Missihoun - Plants, 2021 - mdpi.com
Plants are sessile in nature and they perceive and react to environmental stresses such as
abiotic and biotic factors. These induce a change in the cellular homeostasis of reactive …

In silico prediction of post-translational modifications in therapeutic antibodies

S Vatsa - MAbs, 2022 - Taylor & Francis
Monoclonal antibodies are susceptible to chemical and enzymatic modifications during
manufacturing, storage, and shipping. Deamidation, isomerization, and oxidation can …

[HTML][HTML] iCar-PseCp: identify carbonylation sites in proteins by Monte Carlo sampling and incorporating sequence coupled effects into general PseAAC

J Jia, Z Liu, X Xiao, B Liu, KC Chou - Oncotarget, 2016 - ncbi.nlm.nih.gov
Carbonylation is a posttranslational modification (PTM or PTLM), where a carbonyl group is
added to lysine (K), proline (P), arginine (R), and threonine (T) residue of a protein molecule …

[HTML][HTML] Advanced glycation end products and protein carbonyl levels in plasma reveal sex-specific differences in Parkinson's and Alzheimer's disease

A Sharma, D Weber, J Raupbach, TC Dakal… - Redox biology, 2020 - Elsevier
Neurodegenerative diseases (NDD) such as Alzheimer's (AD) and Parkinson's disease (PD)
are distinct clinical entities, however, the aggregation of key neuronal proteins, presumably …

iCarPS: a computational tool for identifying protein carbonylation sites by novel encoded features

D Zhang, ZC Xu, W Su, YH Yang, H Lv, H Yang… - …, 2021 - academic.oup.com
Motivation Protein carbonylation is one of the most important oxidative stress-induced post-
translational modifications, which is generally characterized as stability, irreversibility and …

Hyperglycemia-triggered lipid peroxidation destabilizes STAT4 and impairs anti-viral Th1 responses in type 2 diabetes

V Gray, W Chen, RJY Tan, JMN Teo, Z Huang… - Cell Metabolism, 2024 - cell.com
Patients with type 2 diabetes (T2D) are more susceptible to severe respiratory viral
infections, but the underlying mechanisms remain elusive. Here, we show that patients with …

Protein structure, amino acid composition and sequence determine proteome vulnerability to oxidation‐induced damage

RL Chang, JA Stanley, MC Robinson, JW Sher… - The EMBO …, 2020 - embopress.org
Oxidative stress alters cell viability, from microorganism irradiation sensitivity to human
aging and neurodegeneration. Deleterious effects of protein carbonylation by reactive …

Research progress in protein posttranslational modification site prediction

W He, L Wei, Q Zou - Briefings in functional genomics, 2019 - academic.oup.com
Posttranslational modifications (PTMs) play an important role in regulating protein folding,
activity and function and are involved in almost all cellular processes. Identification of PTMs …

Characterization and identification of lysine succinylation sites based on deep learning method

KY Huang, JBK Hsu, TY Lee - Scientific reports, 2019 - nature.com
Succinylation is a type of protein post-translational modification (PTM), which can play
important roles in a variety of cellular processes. Due to an increasing number of site …

Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction

S Daberdaku, C Ferrari - BMC bioinformatics, 2018 - Springer
Background The correct determination of protein–protein interaction interfaces is important
for understanding disease mechanisms and for rational drug design. To date, several …