Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics

T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …

3′-end processing of eukaryotic mRNA: machinery, regulation, and impact on gene expression

V Boreikaitė, LA Passmore - Annual review of biochemistry, 2023 - annualreviews.org
Formation of the 3′ end of a eukaryotic mRNA is a key step in the production of a mature
transcript. This process is mediated by a number of protein factors that cleave the pre …

[PDF][PDF] Knowing when to stop: transcription termination on protein-coding genes by eukaryotic RNAPII

JB Rodríguez-Molina, S West, LA Passmore - Molecular cell, 2023 - cell.com
Gene expression is controlled in a dynamic and regulated manner to allow for the consistent
and steady expression of some proteins as well as the rapidly changing production of other …

Small nucleolar RNAs tell a different tale

J Kufel, P Grzechnik - Trends in Genetics, 2019 - cell.com
Transcribing RNA Polymerase II interacts with multiple factors that orchestrate maturation
and stabilisation of messenger RNA. For the majority of noncoding RNAs, the polymerase …

[PDF][PDF] A restrictor complex of ZC3H4, WDR82, and ARS2 integrates with PNUTS to control unproductive transcription

C Estell, L Davidson, JD Eaton, H Kimura, VAM Gold… - Molecular cell, 2023 - cell.com
The transcriptional termination of unstable non-coding RNAs (ncRNAs) is poorly understood
compared to coding transcripts. We recently identified ZC3H4-WDR82 (" restrictor") as …

Reconstitution of 3′ end processing of mammalian pre-mRNA reveals a central role of RBBP6

M Schmidt, F Kluge, F Sandmeir, U Kühn… - Genes & …, 2022 - genesdev.cshlp.org
The 3′ ends of almost all eukaryotic mRNAs are generated in an essential two-step
processing reaction: endonucleolytic cleavage of an extended precursor followed by the …

[PDF][PDF] Structural insights into the human pre-mRNA 3′-end processing machinery

Y Zhang, Y Sun, Y Shi, T Walz, L Tong - Molecular cell, 2020 - cell.com
Summary The mammalian pre-mRNA 3′-end-processing machinery consists of cleavage
and polyadenylation specificity factor (CPSF), cleavage stimulation factor (CstF), and other …

[PDF][PDF] A direct interaction between CPF and RNA Pol II links RNA 3′ end processing to transcription

M Carminati, JB Rodríguez-Molina, MC Manav… - Molecular Cell, 2023 - cell.com
Transcription termination by RNA polymerase II (RNA Pol II) is linked to RNA 3′ end
processing by the cleavage and polyadenylation factor (CPF or CPSF). CPF contains …

Restrictor synergizes with Symplekin and PNUTS to terminate extragenic transcription

M Russo, V Piccolo, D Polizzese… - Genes & …, 2023 - genesdev.cshlp.org
Transcription termination pathways mitigate the detrimental consequences of unscheduled
promiscuous initiation occurring at hundreds of thousands of genomic cis-regulatory …

[PDF][PDF] Mpe1 senses the binding of pre-mRNA and controls 3′ end processing by CPF

JB Rodríguez-Molina, FJ O'Reilly, H Fagarasan… - Molecular Cell, 2022 - cell.com
Most eukaryotic messenger RNAs (mRNAs) are processed at their 3′ end by the cleavage
and polyadenylation specificity factor (CPF/CPSF). CPF mediates the endonucleolytic …