Best practices in metabarcoding of fungi: from experimental design to results
The development of highthroughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …
aiming to detect newly arrived exotic taxa as well as track the population levels of …
eDNA metabarcoding as a biomonitoring tool for marine protected areas
Z Gold, J Sprague, DJ Kushner, E Zerecero Marin… - PLoS …, 2021 - journals.plos.org
Monitoring of marine protected areas (MPAs) is critical for marine ecosystem management,
yet current protocols rely on SCUBA-based visual surveys that are costly and time …
yet current protocols rely on SCUBA-based visual surveys that are costly and time …
Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data
Sequencing-based approaches for the analysis of microbial communities are susceptible to
contamination, which could mask biological signals or generate artifactual ones. Methods for …
contamination, which could mask biological signals or generate artifactual ones. Methods for …
eDNA captures depth partitioning in a kelp forest ecosystem
Environmental DNA (eDNA) metabarcoding is an increasingly important tool for surveying
biodiversity in marine ecosystems. However, the scale of temporal and spatial variability in …
biodiversity in marine ecosystems. However, the scale of temporal and spatial variability in …
Environmental DNA (eDNA) metabarcoding of pond water as a tool to survey conservation and management priority mammals
Environmental DNA (eDNA) metabarcoding can identify terrestrial taxa utilising aquatic
habitats alongside aquatic communities, but terrestrial species' eDNA dynamics are …
habitats alongside aquatic communities, but terrestrial species' eDNA dynamics are …
Human male genital tract microbiota
A Zuber, A Peric, N Pluchino, D Baud… - International journal of …, 2023 - mdpi.com
The human body is vastly colonised by microorganisms, whose impact on health is
increasingly recognised. The human genital tract hosts a diverse microbiota, and an …
increasingly recognised. The human genital tract hosts a diverse microbiota, and an …
Fecal sample collection methods and time of day impact microbiome composition and short chain fatty acid concentrations
Associations between the human gut microbiome and health outcomes continues to be of
great interest, although fecal sample collection methods which impact microbiome studies …
great interest, although fecal sample collection methods which impact microbiome studies …
A manager's guide to using eDNA metabarcoding in marine ecosystems
Environmental DNA (eDNA) metabarcoding is a powerful tool that can enhance marine
ecosystem/biodiversity monitoring programs. Here we outline five important steps managers …
ecosystem/biodiversity monitoring programs. Here we outline five important steps managers …
Broadening oncological boundaries: the intratumoral microbiota
YQ Lu, H Qiao, XR Tan, N Liu - Trends in Microbiology, 2024 - cell.com
The microbiota of solid tumors was identified> 100 years ago; however, heterogeneous
composition and diversity have been revealed only recently. Growing evidence has …
composition and diversity have been revealed only recently. Growing evidence has …