Understanding the impacts of bacteriophage viruses: from laboratory evolution to natural ecosystems

B Koskella, CA Hernandez… - Annual Review of …, 2022 - annualreviews.org
Viruses of bacteria (bacteriophages or phage) have broad effects on bacterial ecology and
evolution in nature that mediate microbial interactions, shape bacterial diversity, and …

The landscape of lysogeny across microbial community density, diversity and energetics

CB Silveira, A Luque, F Rohwer - Environmental microbiology, 2021 - Wiley Online Library
Lysogens are common at high bacterial densities, an observation that contrasts with the
prevailing view of lysogeny as a low‐density refugium strategy. Here, we review the …

Updated virophage taxonomy and distinction from polinton-like viruses

S Roux, MG Fischer, T Hackl, LA Katz, F Schulz… - Biomolecules, 2023 - mdpi.com
Virophages are small dsDNA viruses that hijack the machinery of giant viruses during the co-
infection of a protist (ie, microeukaryotic) host and represent an exceptional case of …

Phylogenomics and genetic analysis of solvent-producing Clostridium species

RO Jensen, F Schulz, S Roux, DM Klingeman… - Scientific data, 2024 - nature.com
The genus Clostridium is a large and diverse group within the Bacillota (formerly Firmicutes),
whose members can encode useful complex traits such as solvent production, gas …

Virus–pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal

T Chen, T Liu, Z Wu, B Wang, Q Chen… - The ISME …, 2023 - academic.oup.com
Bacterial pathogens and viruses are the leading causes of global waterborne diseases.
Here, we discovered an interesting natural paradigm of water “self-purification” through virus …

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

P Panwar, MA Allen, TJ Williams, AM Hancock… - Microbiome, 2020 - Springer
Background Cold environments dominate the Earth's biosphere and microbial activity drives
ecosystem processes thereby contributing greatly to global biogeochemical cycles. Polar …

Composition and function of viruses in sauce-flavor baijiu fermentation

H Du, B Chen, W Fu, F Yang, X Lv, Y Tan, X Xi… - International Journal of …, 2023 - Elsevier
Viruses are highly abundant in nature, associated with quality and safety of traditional
fermented foods. However, the overall viral diversity and function are still poorly understood …

Microbial communities of stratified aquatic ecosystems of Kandalaksha Bay (White Sea) shed light on the evolutionary history of green and brown morphotypes of …

D Grouzdev, V Gaisin, O Lunina… - FEMS Microbiology …, 2022 - academic.oup.com
Anoxygenic photoautotrophic metabolism of green sulfur bacteria of the family
Chlorobiaceae played a significant role in establishing the Earth's biosphere. Two known …

Viruses of sulfur oxidizing phototrophs encode genes for pigment, carbon, and sulfur metabolisms

PJ Hesketh-Best, A Bosco-Santos, SL Garcia… - … Earth & Environment, 2023 - nature.com
Viral infections modulate bacterial metabolism and ecology. Here, we investigated the
hypothesis that viruses influence the ecology of purple and green sulfur bacteria in anoxic …

[HTML][HTML] Long-term CRISPR locus dynamics and stable host-virus co-existence in subsurface fractured shales

KK Amundson, S Roux, JL Shelton, MJ Wilkins - Current Biology, 2023 - cell.com
Viruses are the most ubiquitous biological entities on Earth. Even so, elucidating the impact
of viruses on microbial communities and associated ecosystem processes often requires …