Harnessing the power of RADseq for ecological and evolutionary genomics

KR Andrews, JM Good, MR Miller, G Luikart… - Nature Reviews …, 2016 - nature.com
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …

A framework for incorporating evolutionary genomics into biodiversity conservation and management

A Hoffmann, P Griffin, S Dillon, R Catullo… - Climate Change …, 2015 - Springer
Evolutionary adaptation drives biodiversity. So far, however, evolutionary thinking has had
limited impact on plans to counter the effects of climate change on biodiversity and …

Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …

Morphometric, behavioral, and genomic evidence for a new orangutan species

A Nater, MP Mattle-Greminger, A Nurcahyo, MG Nowak… - Current Biology, 2017 - cell.com
Six extant species of non-human great apes are currently recognized: Sumatran and
Bornean orangutans, eastern and western gorillas, and chimpanzees and bonobos [1] …

Challenges in quantifying genome erosion for conservation

M Bosse, S van Loon - Frontiers in Genetics, 2022 - frontiersin.org
Massive defaunation and high extinction rates have become characteristic of the
Anthropocene. Genetic effects of population decline can lead populations into an extinction …

Genome-wide identification of SNPs and copy number variation in common bean (Phaseolus vulgaris L.) using genotyping-by-sequencing (GBS)

A Ariani, JC Berny Mier y Teran, P Gepts - Molecular breeding, 2016 - Springer
Next-generation sequencing technologies have increased markedly the throughput of
genetic studies, allowing the identification of several thousands of SNPs within a single …

[HTML][HTML] Genome wide sampling sequencing for SNP genotyping: methods, challenges and future development

Z Jiang, H Wang, JJ Michal, X Zhou, B Liu… - … Journal of Biological …, 2016 - ncbi.nlm.nih.gov
Genetic polymorphisms, particularly single nucleotide polymorphisms (SNPs), have been
widely used to advance quantitative, functional and evolutionary genomics. Ideally, all …

Avian genomics: fledging into the wild!

RHS Kraus, M Wink - Journal of Ornithology, 2015 - Springer
Next generation sequencing (NGS) technologies provide great resources to study bird
evolution and avian functional genomics. They also allow for the identification of suitable …

Flexible and scalable genotyping-by-sequencing strategies for population studies

C Heffelfinger, CA Fragoso, MA Moreno, JD Overton… - BMC genomics, 2014 - Springer
Background Many areas critical to agricultural production and research, such as the
breeding and trait mapping in plants and livestock, require robust and scalable genotyping …

Evolution and demography of the great apes

M Kuhlwilm, M De Manuel, A Nater… - Current opinion in …, 2016 - Elsevier
The great apes are the closest living relatives of humans. Chimpanzees and bonobos group
together with humans, while gorillas and orangutans are more divergent from humans. Here …