Protein structure, stability and solubility in water and other solvents
C Nick Pace, S Trevino… - … of the Royal …, 2004 - royalsocietypublishing.org
Proteins carry out the most difficult tasks in living cells. They do so by interacting specifically
with other molecules. This requires that they fold to a unique, globular conformation that is …
with other molecules. This requires that they fold to a unique, globular conformation that is …
Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences
VA Jarymowycz, MJ Stone - Chemical reviews, 2006 - ACS Publications
Over the past 15 years there has been an explosion of research on the dynamical properties
of proteins, largely driven by the emergence of a handful of techniques that are sensitive to …
of proteins, largely driven by the emergence of a handful of techniques that are sensitive to …
[HTML][HTML] Determination of ensemble-average pairwise root mean-square deviation from experimental B-factors
A Kuzmanic, B Zagrovic - Biophysical journal, 2010 - cell.com
Root mean-square deviation (RMSD) after roto-translational least-squares fitting is a
measure of global structural similarity of macromolecules used commonly. On the other …
measure of global structural similarity of macromolecules used commonly. On the other …
Tyrosine hydrogen bonds make a large contribution to protein stability
CN Pace, G Horn, EJ Hebert, J Bechert, K Shaw… - Journal of molecular …, 2001 - Elsevier
The aim of this study was to gain a better understanding of the contribution of hydrogen
bonds by tyrosine-OH groups to protein stability. The amino acid sequences of RNases Sa …
bonds by tyrosine-OH groups to protein stability. The amino acid sequences of RNases Sa …
Charge–charge interactions are key determinants of the pK values of ionizable groups in ribonuclease Sa (pI= 3.5) and a basic variant (pI= 10.2)
DV Laurents, BMP Huyghues-Despointes… - Journal of molecular …, 2003 - Elsevier
The pK values of the titratable groups in ribonuclease Sa (RNase Sa)(pI= 3.5), and a charge-
reversed variant with five carboxyl to lysine substitutions, 5K RNase Sa (pI= 10.2), have …
reversed variant with five carboxyl to lysine substitutions, 5K RNase Sa (pI= 10.2), have …
[HTML][HTML] The contribution of polar group burial to protein stability is strongly context-dependent
K Takano, JM Scholtz, JC Sacchettini… - Journal of Biological …, 2003 - ASBMB
We previously suggested that proteins gain more stability from the burial and hydrogen
bonding of polar groups than from the burial of nonpolar groups (Pace, CN (2001) …
bonding of polar groups than from the burial of nonpolar groups (Pace, CN (2001) …
Hydrogen bonding markedly reduces the pK of buried carboxyl groups in proteins
RL Thurlkill, GR Grimsley, JM Scholtz… - Journal of molecular …, 2006 - Elsevier
The ionizable groups in proteins with the lowest pKs are the carboxyl groups of aspartic acid
side-chains. One of the lowest, pK= 0.6, is observed for Asp76 in ribonuclease T1. This low …
side-chains. One of the lowest, pK= 0.6, is observed for Asp76 in ribonuclease T1. This low …
Observation of fast two-dimensional NMR spectra during protein folding using polarization transfer from hyperpolarized water
Nuclear spin hyperpolarized water is utilized to obtain protein spectra not only in the folded
state but also during the refolding process. Polarization transfer to Ribonuclease Sa through …
state but also during the refolding process. Polarization transfer to Ribonuclease Sa through …
Carbodiimide EDC induces cross-links that stabilize RNase A C-dimer against dissociation: EDC adducts can affect protein net charge, conformation, and activity
JP López-Alonso, F Diez-Garcia, J Font… - Bioconjugate …, 2009 - ACS Publications
RNase A self-associates under certain conditions to form a series of domain-swapped
oligomers. These oligomers show high catalytic activity against double-stranded RNA and …
oligomers. These oligomers show high catalytic activity against double-stranded RNA and …
[HTML][HTML] Contribution of single tryptophan residues to the fluorescence and stability of ribonuclease Sa
RW Alston, L Urbanikova, J Sevcik, M Lasagna… - Biophysical journal, 2004 - cell.com
Abstract Ribonuclease Sa (RNase Sa) contains no tryptophan (Trp) residues. We have
added single Trp residues to RNase Sa at sites where Trp is found in four other microbial …
added single Trp residues to RNase Sa at sites where Trp is found in four other microbial …