Protein structure, stability and solubility in water and other solvents

C Nick Pace, S Trevino… - … of the Royal …, 2004 - royalsocietypublishing.org
Proteins carry out the most difficult tasks in living cells. They do so by interacting specifically
with other molecules. This requires that they fold to a unique, globular conformation that is …

Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

VA Jarymowycz, MJ Stone - Chemical reviews, 2006 - ACS Publications
Over the past 15 years there has been an explosion of research on the dynamical properties
of proteins, largely driven by the emergence of a handful of techniques that are sensitive to …

[HTML][HTML] Determination of ensemble-average pairwise root mean-square deviation from experimental B-factors

A Kuzmanic, B Zagrovic - Biophysical journal, 2010 - cell.com
Root mean-square deviation (RMSD) after roto-translational least-squares fitting is a
measure of global structural similarity of macromolecules used commonly. On the other …

Tyrosine hydrogen bonds make a large contribution to protein stability

CN Pace, G Horn, EJ Hebert, J Bechert, K Shaw… - Journal of molecular …, 2001 - Elsevier
The aim of this study was to gain a better understanding of the contribution of hydrogen
bonds by tyrosine-OH groups to protein stability. The amino acid sequences of RNases Sa …

Charge–charge interactions are key determinants of the pK values of ionizable groups in ribonuclease Sa (pI= 3.5) and a basic variant (pI= 10.2)

DV Laurents, BMP Huyghues-Despointes… - Journal of molecular …, 2003 - Elsevier
The pK values of the titratable groups in ribonuclease Sa (RNase Sa)(pI= 3.5), and a charge-
reversed variant with five carboxyl to lysine substitutions, 5K RNase Sa (pI= 10.2), have …

[HTML][HTML] The contribution of polar group burial to protein stability is strongly context-dependent

K Takano, JM Scholtz, JC Sacchettini… - Journal of Biological …, 2003 - ASBMB
We previously suggested that proteins gain more stability from the burial and hydrogen
bonding of polar groups than from the burial of nonpolar groups (Pace, CN (2001) …

Hydrogen bonding markedly reduces the pK of buried carboxyl groups in proteins

RL Thurlkill, GR Grimsley, JM Scholtz… - Journal of molecular …, 2006 - Elsevier
The ionizable groups in proteins with the lowest pKs are the carboxyl groups of aspartic acid
side-chains. One of the lowest, pK= 0.6, is observed for Asp76 in ribonuclease T1. This low …

Observation of fast two-dimensional NMR spectra during protein folding using polarization transfer from hyperpolarized water

J Kim, R Mandal, C Hilty - The Journal of Physical Chemistry …, 2019 - ACS Publications
Nuclear spin hyperpolarized water is utilized to obtain protein spectra not only in the folded
state but also during the refolding process. Polarization transfer to Ribonuclease Sa through …

Carbodiimide EDC induces cross-links that stabilize RNase A C-dimer against dissociation: EDC adducts can affect protein net charge, conformation, and activity

JP López-Alonso, F Diez-Garcia, J Font… - Bioconjugate …, 2009 - ACS Publications
RNase A self-associates under certain conditions to form a series of domain-swapped
oligomers. These oligomers show high catalytic activity against double-stranded RNA and …

[HTML][HTML] Contribution of single tryptophan residues to the fluorescence and stability of ribonuclease Sa

RW Alston, L Urbanikova, J Sevcik, M Lasagna… - Biophysical journal, 2004 - cell.com
Abstract Ribonuclease Sa (RNase Sa) contains no tryptophan (Trp) residues. We have
added single Trp residues to RNase Sa at sites where Trp is found in four other microbial …