Optogenetics for transcriptional programming and genetic engineering

TH Lan, L He, Y Huang, Y Zhou - Trends in Genetics, 2022 - cell.com
Optogenetics combines genetics and biophotonics to enable noninvasive control of
biological processes with high spatiotemporal precision. When engineered into protein …

The red edge: bilin-binding photoreceptors as optogenetic tools and fluorescence reporters

K Tang, HM Beyer, MD Zurbriggen… - Chemical …, 2021 - ACS Publications
This review adds the bilin-binding phytochromes to the Chemical Reviews thematic issue
“Optogenetics and Photopharmacology”. The work is structured into two parts. We first …

A LOV2 domain-based optogenetic tool to control protein degradation and cellular function

C Renicke, D Schuster, S Usherenko, LO Essen… - Chemistry & biology, 2013 - cell.com
Light perception is indispensable for plants to respond adequately to external cues and is
linked to proteolysis of key transcriptional regulators. To provide synthetic light control of …

In silico feedback for in vivo regulation of a gene expression circuit

A Milias-Argeitis, S Summers, J Stewart-Ornstein… - Nature …, 2011 - nature.com
We show that difficulties in regulating cellular behavior with synthetic biological circuits may
be circumvented using in silico feedback control. By tracking a circuit's output in …

Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology

BA Blount, T Weenink, S Vasylechko, T Ellis - PloS one, 2012 - journals.plos.org
Yeast is an ideal organism for the development and application of synthetic biology, yet
there remain relatively few well-characterised biological parts suitable for precise …

Optophysiology: Illuminating cell physiology with optogenetics

P Tan, L He, Y Huang, Y Zhou - Physiological reviews, 2022 - journals.physiology.org
Optogenetics combines light and genetics to enable precise control of living cells, tissues,
and organisms with tailored functions. Optogenetics has the advantages of …

Photoconversion and nuclear trafficking cycles determine phytochrome A's response profile to far-red light

J Rausenberger, A Tscheuschler, W Nordmeier, F Wüst… - Cell, 2011 - cell.com
Phytochrome A (phyA) is the only photoreceptor in plants, initiating responses in far-red light
and, as such, essential for survival in canopy shade. Although the absorption and the ratio of …

Synthetic biology toolkits and applications in Saccharomyces cerevisiae

B Chen, HL Lee, YC Heng, N Chua, WS Teo… - Biotechnology …, 2018 - Elsevier
Synthetic biologists construct biological components and systems to look into biological
phenomena and drive a myriad of practical applications that aim to tackle current global …

Construction and optimization of synthetic pathways in metabolic engineering

D Na, TY Kim, SY Lee - Current opinion in microbiology, 2010 - Elsevier
Metabolic engineering has enabled us to develop strains suitable for their use as microbial
factories of chemicals and materials from renewable sources. It has recently become more …

Optogenetic tools for microbial synthetic biology

N Chia, SY Lee, Y Tong - Biotechnology Advances, 2022 - Elsevier
Chemical induction is one of the most common modalities used to manipulate gene
expression in living systems. However, chemical induction can be toxic or expensive that …