De novo protein design, a retrospective

IV Korendovych, WF DeGrado - Quarterly reviews of biophysics, 2020 - cambridge.org
Proteins are molecular machines whose function depends on their ability to achieve
complex folds with precisely defined structural and dynamic properties. The rational design …

[HTML][HTML] Forces stabilizing proteins

CN Pace, JM Scholtz, GR Grimsley - FEBS letters, 2014 - Elsevier
The goal of this article is to summarize what has been learned about the major forces
stabilizing proteins since the late 1980s when site-directed mutagenesis became possible …

Mechanism of CFTR correction by type I folding correctors

K Fiedorczuk, J Chen - Cell, 2022 - cell.com
Small molecule chaperones have been exploited as therapeutics for the hundreds of
diseases caused by protein misfolding. The most successful examples are the CFTR …

The realm of unconventional noncovalent interactions in proteins: their significance in structure and function

VA Adhav, K Saikrishnan - Acs Omega, 2023 - ACS Publications
Proteins and their assemblies are fundamental for living cells to function. Their complex
three-dimensional architecture and its stability are attributed to the combined effect of …

Ultra light-sensitive and fast neuronal activation with the Ca2+-permeable channelrhodopsin CatCh

S Kleinlogel, K Feldbauer, RE Dempski, H Fotis… - Nature …, 2011 - nature.com
The light-gated cation channel channelrhodopsin-2 (ChR2) has rapidly become an
important tool in neuroscience, and its use is being considered in therapeutic interventions …

Contribution of hydrophobic interactions to protein stability

CN Pace, H Fu, KL Fryar, J Landua, SR Trevino… - Journal of molecular …, 2011 - Elsevier
Our goal was to gain a better understanding of the contribution of hydrophobic interactions
to protein stability. We measured the change in conformational stability, Δ (ΔG), for …

How much do van der Waals dispersion forces contribute to molecular recognition in solution?

L Yang, C Adam, GS Nichol, SL Cockroft - Nature chemistry, 2013 - nature.com
The emergent properties that arise from self-assembly and molecular recognition
phenomena are a direct consequence of non-covalent interactions. Gas-phase …

Packing of apolar side chains enables accurate design of highly stable membrane proteins

M Mravic, JL Thomaston, M Tucker, PE Solomon, L Liu… - Science, 2019 - science.org
The features that stabilize the structures of membrane proteins remain poorly understood.
Polar interactions contribute modestly, and the hydrophobic effect contributes little to the …

Lessons from the lysozyme of phage T4

WA Baase, L Liu, DE Tronrud, BW Matthews - Protein Science, 2010 - Wiley Online Library
An overview is presented of some of the major insights that have come from studies of the
structure, stability, and folding of T4 phage lysozyme. A major purpose of this review is to …

[HTML][HTML] Bacteriorhodopsin: Would the real structural intermediates please stand up?

C Wickstrand, R Dods, A Royant, R Neutze - Biochimica et Biophysica Acta …, 2015 - Elsevier
Background Bacteriorhodopsin (bR) is the simplest known light driven proton pump and has
been heavily studied using structural methods: eighty four X-ray diffraction, six electron …