Binding mechanisms in supramolecular complexes
HJ Schneider - Angewandte Chemie International Edition, 2009 - Wiley Online Library
Forces to reckon with: Supramolecular complexes, such as the one shown, are normally
based on a combination of different interactions such as ion pairing, hydrogen bonds, and …
based on a combination of different interactions such as ion pairing, hydrogen bonds, and …
Multivalent ligand presentation as a central concept to study intricate carbohydrate–protein interactions
N Jayaraman - Chemical society reviews, 2009 - pubs.rsc.org
Studying the weak binding affinities between carbohydrates and proteins has been a central
theme in sustained efforts to uncover intricate details of this class of biomolecular interaction …
theme in sustained efforts to uncover intricate details of this class of biomolecular interaction …
Molecular docking
GM Morris, M Lim-Wilby - Molecular modeling of proteins, 2008 - Springer
Molecular docking is a key tool in structural molecular biology and computer-assisted drug
design. The goal of ligand—protein docking is to predict the predominant binding mode (s) …
design. The goal of ligand—protein docking is to predict the predominant binding mode (s) …
A reoptimized GROMOS force field for hexopyranose‐based carbohydrates accounting for the relative free energies of ring conformers, anomers, epimers …
HS Hansen, PH Hünenberger - Journal of computational …, 2011 - Wiley Online Library
This article presents a reoptimization of the GROMOS 53A6 force field for hexopyranose‐
based carbohydrates (nearly equivalent to 45A4 for pure carbohydrate systems) into a new …
based carbohydrates (nearly equivalent to 45A4 for pure carbohydrate systems) into a new …
Molecular simulations of carbohydrates and protein–carbohydrate interactions: motivation, issues and prospects
The characterization of the 3D structure of oligosaccharides, their conjugates and analogs is
particularly challenging for traditional experimental methods. Molecular simulation methods …
particularly challenging for traditional experimental methods. Molecular simulation methods …
Bindungsmechanismen in supramolekularen Komplexen
HJ Schneider - Angewandte Chemie, 2009 - Wiley Online Library
Abstract Kräfte‐Sammelsurium: Supramolekulare Komplexe, wie der gezeigte, beruhen
meist auf einer Kombination unterschiedlichster Wechselwirkungen, wie Ionenpaarbildung …
meist auf einer Kombination unterschiedlichster Wechselwirkungen, wie Ionenpaarbildung …
Enhancing functional properties of soy protein isolate—rice starch complex using ultrasonication and its characterization
Proteins are widely consumed for their nutritional benefits, and they possess many
applications such as emulsifiers, foaming agents, fat replacers, and thickeners which aid in …
applications such as emulsifiers, foaming agents, fat replacers, and thickeners which aid in …
Importance of ligand conformational energies in carbohydrate docking: Sorting the wheat from the chaff
AK Nivedha, S Makeneni, BL Foley… - Journal of …, 2014 - Wiley Online Library
Docking algorithms that aim to be applicable to a broad range of ligands suffer reduced
accuracy because they are unable to incorporate ligand‐specific conformational energies …
accuracy because they are unable to incorporate ligand‐specific conformational energies …
Glycans in HIV-1 vaccine design–engaging the shield
LP Deimel, X Xue, QJ Sattentau - Trends in Microbiology, 2022 - cell.com
Glycans are repeating carbohydrate structures added as post-translational modifications
(PTMs) to proteins, forming glycoproteins. Self-glycans found on human cells, and viral …
(PTMs) to proteins, forming glycoproteins. Self-glycans found on human cells, and viral …
Bioinformatics and molecular modeling in glycobiology
M Frank, S Schloissnig - Cellular and molecular life sciences, 2010 - Springer
The field of glycobiology is concerned with the study of the structure, properties, and
biological functions of the family of biomolecules called carbohydrates. Bioinformatics for …
biological functions of the family of biomolecules called carbohydrates. Bioinformatics for …