Binding mechanisms in supramolecular complexes

HJ Schneider - Angewandte Chemie International Edition, 2009 - Wiley Online Library
Forces to reckon with: Supramolecular complexes, such as the one shown, are normally
based on a combination of different interactions such as ion pairing, hydrogen bonds, and …

Multivalent ligand presentation as a central concept to study intricate carbohydrate–protein interactions

N Jayaraman - Chemical society reviews, 2009 - pubs.rsc.org
Studying the weak binding affinities between carbohydrates and proteins has been a central
theme in sustained efforts to uncover intricate details of this class of biomolecular interaction …

Molecular docking

GM Morris, M Lim-Wilby - Molecular modeling of proteins, 2008 - Springer
Molecular docking is a key tool in structural molecular biology and computer-assisted drug
design. The goal of ligand—protein docking is to predict the predominant binding mode (s) …

A reoptimized GROMOS force field for hexopyranose‐based carbohydrates accounting for the relative free energies of ring conformers, anomers, epimers …

HS Hansen, PH Hünenberger - Journal of computational …, 2011 - Wiley Online Library
This article presents a reoptimization of the GROMOS 53A6 force field for hexopyranose‐
based carbohydrates (nearly equivalent to 45A4 for pure carbohydrate systems) into a new …

Molecular simulations of carbohydrates and protein–carbohydrate interactions: motivation, issues and prospects

E Fadda, RJ Woods - Drug discovery today, 2010 - Elsevier
The characterization of the 3D structure of oligosaccharides, their conjugates and analogs is
particularly challenging for traditional experimental methods. Molecular simulation methods …

Bindungsmechanismen in supramolekularen Komplexen

HJ Schneider - Angewandte Chemie, 2009 - Wiley Online Library
Abstract Kräfte‐Sammelsurium: Supramolekulare Komplexe, wie der gezeigte, beruhen
meist auf einer Kombination unterschiedlichster Wechselwirkungen, wie Ionenpaarbildung …

Enhancing functional properties of soy protein isolate—rice starch complex using ultrasonication and its characterization

N Thirunavookarasu, S Kumar, A Anandharaj… - Food and Bioprocess …, 2024 - Springer
Proteins are widely consumed for their nutritional benefits, and they possess many
applications such as emulsifiers, foaming agents, fat replacers, and thickeners which aid in …

Importance of ligand conformational energies in carbohydrate docking: Sorting the wheat from the chaff

AK Nivedha, S Makeneni, BL Foley… - Journal of …, 2014 - Wiley Online Library
Docking algorithms that aim to be applicable to a broad range of ligands suffer reduced
accuracy because they are unable to incorporate ligand‐specific conformational energies …

Glycans in HIV-1 vaccine design–engaging the shield

LP Deimel, X Xue, QJ Sattentau - Trends in Microbiology, 2022 - cell.com
Glycans are repeating carbohydrate structures added as post-translational modifications
(PTMs) to proteins, forming glycoproteins. Self-glycans found on human cells, and viral …

Bioinformatics and molecular modeling in glycobiology

M Frank, S Schloissnig - Cellular and molecular life sciences, 2010 - Springer
The field of glycobiology is concerned with the study of the structure, properties, and
biological functions of the family of biomolecules called carbohydrates. Bioinformatics for …