CRISPR screens for functional interrogation of immunity

H Shi, JG Doench, H Chi - Nature Reviews Immunology, 2023 - nature.com
CRISPR-based technologies represent a major breakthrough in biomedical science as they
offer a powerful platform for unbiased screening and functional genomics in various fields …

Cytochrome P450 oxidoreductase contributes to phospholipid peroxidation in ferroptosis

Y Zou, H Li, ET Graham, AA Deik, JK Eaton… - Nature chemical …, 2020 - nature.com
Ferroptosis is widely involved in degenerative diseases in various tissues including kidney,
liver and brain, and is a targetable vulnerability in multiple primary and therapy-resistant …

Tutorial: design and execution of CRISPR in vivo screens

CJ Braun, AC Adames, D Saur, R Rad - Nature Protocols, 2022 - nature.com
Here we provide a detailed tutorial on CRISPR in vivo screening. Using the mouse as the
model organism, we introduce a range of CRISPR tools and applications, delineate general …

A GPX4-dependent cancer cell state underlies the clear-cell morphology and confers sensitivity to ferroptosis

Y Zou, MJ Palte, AA Deik, H Li, JK Eaton… - Nature …, 2019 - nature.com
Clear-cell carcinomas (CCCs) are a histological group of highly aggressive malignancies
commonly originating in the kidney and ovary. CCCs are distinguished by aberrant lipid and …

Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells

EP Mimitou, A Cheng, A Montalbano, S Hao… - Nature …, 2019 - nature.com
Multimodal single-cell assays provide high-resolution snapshots of complex cell
populations, but are mostly limited to transcriptome plus an additional modality. Here, we …

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

CH Holland, J Tanevski, J Perales-Patón, J Gleixner… - Genome biology, 2020 - Springer
Background Many functional analysis tools have been developed to extract functional and
mechanistic insight from bulk transcriptome data. With the advent of single-cell RNA …

Optimization of AsCas12a for combinatorial genetic screens in human cells

PC DeWeirdt, KR Sanson, AK Sangree, M Hegde… - Nature …, 2021 - nature.com
Cas12a RNA-guided endonucleases are promising tools for multiplexed genetic
perturbations because they can process multiple guide RNAs expressed as a single …

Pooled knockin targeting for genome engineering of cellular immunotherapies

TL Roth, PJ Li, F Blaeschke, JF Nies, R Apathy… - Cell, 2020 - cell.com
Adoptive transfer of genetically modified immune cells holds great promise for cancer
immunotherapy. CRISPR knockin targeting can improve cell therapies, but more high …

CRISPR-based functional profiling of the Toxoplasma gondii genome during acute murine infection

CJ Giuliano, KJ Wei, FM Harling, BS Waldman… - Nature …, 2024 - nature.com
Examining host–pathogen interactions in animals can capture aspects of infection that are
obscured in cell culture. Using CRISPR-based screens, we functionally profile the entire …

High-performance CRISPR-Cas12a genome editing for combinatorial genetic screening

RA Gier, KA Budinich, NH Evitt, Z Cao… - Nature …, 2020 - nature.com
CRISPR-based genetic screening has revolutionized cancer drug target discovery, yet
reliable, multiplex gene editing to reveal synergies between gene targets remains a major …