[HTML][HTML] Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

[HTML][HTML] The role of regulatory variation in complex traits and disease

FW Albert, L Kruglyak - Nature Reviews Genetics, 2015 - nature.com
We are in a phase of unprecedented progress in identifying genetic loci that cause variation
in traits ranging from growth and fitness in simple organisms to disease in humans …

[HTML][HTML] The evolution, evolvability and engineering of gene regulatory DNA

ED Vaishnav, CG de Boer, J Molinet, M Yassour, L Fan… - Nature, 2022 - nature.com
Mutations in non-coding regulatory DNA sequences can alter gene expression, organismal
phenotype and fitness,–. Constructing complete fitness landscapes, in which DNA …

[HTML][HTML] Titrating gene expression using libraries of systematically attenuated CRISPR guide RNAs

M Jost, DA Santos, RA Saunders, MA Horlbeck… - Nature …, 2020 - nature.com
A lack of tools to precisely control gene expression has limited our ability to evaluate
relationships between expression levels and phenotypes. Here, we describe an approach to …

How fast‐growing bacteria robustly tune their ribosome concentration to approximate growth‐rate maximization

E Bosdriesz, D Molenaar, B Teusink… - The FEBS …, 2015 - Wiley Online Library
Maximization of growth rate is an important fitness strategy for bacteria. Bacteria can achieve
this by expressing proteins at optimal concentrations, such that resources are not wasted …

[HTML][HTML] Mismatch-CRISPRi reveals the co-varying expression-fitness relationships of essential genes in Escherichia coli and Bacillus subtilis

JS Hawkins, MR Silvis, BM Koo, JM Peters, H Osadnik… - Cell Systems, 2020 - cell.com
Essential genes are the hubs of cellular networks, but lack of high-throughput methods for
titrating gene expression has limited our understanding of the fitness landscapes against …

[HTML][HTML] Massively parallel interrogation of the effects of gene expression levels on fitness

L Keren, J Hausser, M Lotan-Pompan, IV Slutskin… - Cell, 2016 - cell.com
Data of gene expression levels across individuals, cell types, and disease states is
expanding, yet our understanding of how expression levels impact phenotype is limited …

[HTML][HTML] Dominance reversals and the maintenance of genetic variation for fitness

T Connallon, SF Chenoweth - PLoS Biology, 2019 - journals.plos.org
Antagonistic selection between different fitness components (eg, survival versus fertility) or
different types of individuals in a population (eg, females versus males) can potentially …

A synthetic growth switch based on controlled expression of RNA polymerase

J Izard, CDC Gomez Balderas, D Ropers… - Molecular systems …, 2015 - embopress.org
The ability to control growth is essential for fundamental studies of bacterial physiology and
biotechnological applications. We have engineered an Escherichia coli strain in which the …

[HTML][HTML] Empirical mean-noise fitness landscapes reveal the fitness impact of gene expression noise

JM Schmiedel, LB Carey, B Lehner - Nature Communications, 2019 - nature.com
The effects of cell-to-cell variation (noise) in gene expression have proven difficult to quantify
because of the mechanistic coupling of noise to mean expression. To independently …