[HTML][HTML] Molecular and evolutionary processes generating variation in gene expression
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …
variation arises from mutations that alter the form or function of molecular gene regulatory …
[HTML][HTML] The role of regulatory variation in complex traits and disease
FW Albert, L Kruglyak - Nature Reviews Genetics, 2015 - nature.com
We are in a phase of unprecedented progress in identifying genetic loci that cause variation
in traits ranging from growth and fitness in simple organisms to disease in humans …
in traits ranging from growth and fitness in simple organisms to disease in humans …
[HTML][HTML] The evolution, evolvability and engineering of gene regulatory DNA
Mutations in non-coding regulatory DNA sequences can alter gene expression, organismal
phenotype and fitness,–. Constructing complete fitness landscapes, in which DNA …
phenotype and fitness,–. Constructing complete fitness landscapes, in which DNA …
[HTML][HTML] Titrating gene expression using libraries of systematically attenuated CRISPR guide RNAs
A lack of tools to precisely control gene expression has limited our ability to evaluate
relationships between expression levels and phenotypes. Here, we describe an approach to …
relationships between expression levels and phenotypes. Here, we describe an approach to …
How fast‐growing bacteria robustly tune their ribosome concentration to approximate growth‐rate maximization
Maximization of growth rate is an important fitness strategy for bacteria. Bacteria can achieve
this by expressing proteins at optimal concentrations, such that resources are not wasted …
this by expressing proteins at optimal concentrations, such that resources are not wasted …
[HTML][HTML] Mismatch-CRISPRi reveals the co-varying expression-fitness relationships of essential genes in Escherichia coli and Bacillus subtilis
Essential genes are the hubs of cellular networks, but lack of high-throughput methods for
titrating gene expression has limited our understanding of the fitness landscapes against …
titrating gene expression has limited our understanding of the fitness landscapes against …
[HTML][HTML] Massively parallel interrogation of the effects of gene expression levels on fitness
Data of gene expression levels across individuals, cell types, and disease states is
expanding, yet our understanding of how expression levels impact phenotype is limited …
expanding, yet our understanding of how expression levels impact phenotype is limited …
[HTML][HTML] Dominance reversals and the maintenance of genetic variation for fitness
T Connallon, SF Chenoweth - PLoS Biology, 2019 - journals.plos.org
Antagonistic selection between different fitness components (eg, survival versus fertility) or
different types of individuals in a population (eg, females versus males) can potentially …
different types of individuals in a population (eg, females versus males) can potentially …
A synthetic growth switch based on controlled expression of RNA polymerase
J Izard, CDC Gomez Balderas, D Ropers… - Molecular systems …, 2015 - embopress.org
The ability to control growth is essential for fundamental studies of bacterial physiology and
biotechnological applications. We have engineered an Escherichia coli strain in which the …
biotechnological applications. We have engineered an Escherichia coli strain in which the …
[HTML][HTML] Empirical mean-noise fitness landscapes reveal the fitness impact of gene expression noise
The effects of cell-to-cell variation (noise) in gene expression have proven difficult to quantify
because of the mechanistic coupling of noise to mean expression. To independently …
because of the mechanistic coupling of noise to mean expression. To independently …