The causes and consequences of genetic interactions (epistasis)
J Domingo, P Baeza-Centurion… - Annual review of …, 2019 - annualreviews.org
The same mutation can have different effects in different individuals. One important reason
for this is that the outcome of a mutation can depend on the genetic context in which it …
for this is that the outcome of a mutation can depend on the genetic context in which it …
Predicting evolution
M Lässig, V Mustonen, AM Walczak - Nature ecology & evolution, 2017 - nature.com
The face of evolutionary biology is changing: from reconstructing and analysing the past to
predicting future evolutionary processes. Recent developments include prediction of …
predicting future evolutionary processes. Recent developments include prediction of …
MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
Motivation: Recent developments of statistical techniques to infer direct evolutionary
couplings between residue pairs have rendered covariation-based contact prediction a …
couplings between residue pairs have rendered covariation-based contact prediction a …
Causes of molecular convergence and parallelism in protein evolution
JF Storz - Nature Reviews Genetics, 2016 - nature.com
To what extent is the convergent evolution of protein function attributable to convergent or
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …
Perspective: sign epistasis and genetic costraint on evolutionary trajectories
Epistasis for fitness means that the selective effect of a mutation is conditional on the genetic
background in which it appears. Although epistasis is widely observed in nature, our …
background in which it appears. Although epistasis is widely observed in nature, our …
Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction
Motivation: Compensating alterations during the evolution of protein families give rise to
coevolving positions that contain important structural and functional information. However, a …
coevolving positions that contain important structural and functional information. However, a …
Missense meanderings in sequence space: a biophysical view of protein evolution
Proteins are finicky molecules; they are barely stable and are prone to aggregate, but they
must function in a crowded environment that is full of degradative enzymes bent on their …
must function in a crowded environment that is full of degradative enzymes bent on their …
Molecular mechanisms of epistasis within and between genes
B Lehner - Trends in Genetics, 2011 - cell.com
'Disease-causing'mutations do not cause disease in all individuals. One possible important
reason for this is that the outcome of a mutation can depend upon other genetic variants in a …
reason for this is that the outcome of a mutation can depend upon other genetic variants in a …
[图书][B] Introduction to proteins: structure, function, and motion
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
An integrated view of protein evolution
Why do proteins evolve at different rates? Advances in systems biology and genomics have
facilitated a move from studying individual proteins to characterizing global cellular factors …
facilitated a move from studying individual proteins to characterizing global cellular factors …