Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Diversity, ecology and evolution of Archaea

BJ Baker, V De Anda, KW Seitz, N Dombrowski… - Nature …, 2020 - nature.com
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …

A standardized archaeal taxonomy for the Genome Taxonomy Database

C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil… - Nature …, 2021 - nature.com
The accrual of genomic data from both cultured and uncultured microorganisms provides
new opportunities to develop systematic taxonomies based on evolutionary relationships …

Major new microbial groups expand diversity and alter our understanding of the tree of life

CJ Castelle, JF Banfield - Cell, 2018 - cell.com
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …

Archaea and the origin of eukaryotes

L Eme, A Spang, J Lombard, CW Stairs… - Nature Reviews …, 2017 - nature.com
Woese and Fox's 1977 paper on the discovery of the Archaea triggered a revolution in the
field of evolutionary biology by showing that life was divided into not only prokaryotes and …

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

CJ Castelle, CT Brown, K Anantharaman… - Nature Reviews …, 2018 - nature.com
Candidate phyla radiation (CPR) bacteria and DPANN (an acronym of the names of the first
included phyla) archaea are massive radiations of organisms that are widely distributed …

Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems

C He, R Keren, ML Whittaker, IF Farag, JA Doudna… - Nature …, 2021 - nature.com
Candidate phyla radiation (CPR) bacteria and DPANN archaea are unisolated, small-celled
symbionts that are often detected in groundwater. The effects of groundwater geochemistry …

New CRISPR–Cas systems from uncultivated microbes

D Burstein, LB Harrington, SC Strutt, AJ Probst… - Nature, 2017 - nature.com
CRISPR–Cas systems provide microbes with adaptive immunity by employing short DNA
sequences, termed spacers, that guide Cas proteins to cleave foreign DNA,. Class 2 …

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

PS Adam, G Borrel, C Brochier-Armanet… - The ISME …, 2017 - academic.oup.com
The Archaea occupy a key position in the Tree of Life, and are a major fraction of microbial
diversity. Abundant in soils, ocean sediments and the water column, they have crucial roles …

Insights into the phylogeny and coding potential of microbial dark matter

C Rinke, P Schwientek, A Sczyrba, NN Ivanova… - Nature, 2013 - nature.com
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However …