Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

[HTML][HTML] The developing toolkit of continuous directed evolution

MS Morrison, CJ Podracky, DR Liu - Nature chemical biology, 2020 - nature.com
Continuous directed evolution methods allow the key steps of evolution—gene
diversification, selection, and replication—to proceed in the laboratory with minimal …

Formation of giant lipid vesiclelike compartments from a planar lipid membrane by a pulsed jet flow

K Funakoshi, H Suzuki, S Takeuchi - Journal of the American …, 2007 - ACS Publications
We report a straightforward method for the preparation of lipid vesicles inspired by forming
soap bubbles from a soap film. Vesicles are mechanically blown out of a preformed …

In vitro evolution of α-hemolysin using a liposome display

S Fujii, T Matsuura, T Sunami… - Proceedings of the …, 2013 - National Acad Sciences
In vitro methods have enabled the rapid and efficient evolution of proteins and successful
generation of novel and highly functional proteins. However, the available methods consider …

The toolbox for modified aptamers

SA Lapa, AV Chudinov, EN Timofeev - Molecular biotechnology, 2016 - Springer
Aptamers are nucleic acid-based scaffolds that can bind with high affinity to a variety of
biological targets. Aptamers are identified from large DNA or RNA libraries through a …

Roadmap to building a cell: an evolutionary approach

Z Abil, C Danelon - Frontiers in Bioengineering and Biotechnology, 2020 - frontiersin.org
Laboratory synthesis of an elementary biological cell from isolated components may aid in
understanding of the fundamental principles of life and will provide a platform for a range of …

[HTML][HTML] A high-throughput cellulase screening system based on droplet microfluidics

R Ostafe, R Prodanovic, W Lloyd Ung, DA Weitz… - …, 2014 - pubs.aip.org
A new ultra-high-throughput screening assay for the detection of cellulase activity was
developed based on microfluidic sorting. Cellulase activity is detected using a series of …

Emergent time scales of epistasis in protein evolution

L Di Bari, M Bisardi, S Cotogno, M Weigt… - Proceedings of the …, 2024 - pnas.org
We introduce a data-driven epistatic model of protein evolution, capable of generating
evolutionary trajectories spanning very different time scales reaching from individual …

Computational Frontiers in Aptamer-Based Nanomedicine for Precision Therapeutics: A Comprehensive Review

S Kumar, A Mohan, NR Sharma, A Kumar… - ACS …, 2024 - ACS Publications
In the rapidly evolving landscape of nanomedicine, aptamers have emerged as powerful
molecular tools, demonstrating immense potential in targeted therapeutics, diagnostics, and …

Synthesis of milligram quantities of proteins using a reconstituted in vitro protein synthesis system

Y Kazuta, T Matsuura, N Ichihashi, T Yomo - Journal of bioscience and …, 2014 - Elsevier
In this study, the amount of protein synthesized using an in vitro protein synthesis system
composed of only highly purified components (the PURE system) was optimized. By varying …