[HTML][HTML] De novo assembly of transcriptomes and differential gene expression analysis using short-read data from emerging model organisms–a brief guide

DJ Jackson, N Cerveau, N Posnien - Frontiers in Zoology, 2024 - Springer
Many questions in biology benefit greatly from the use of a variety of model systems. High-
throughput sequencing methods have been a triumph in the democratization of diverse …

[HTML][HTML] Expression analyses in Ginkgo biloba provide new insights into the evolution and development of the seed

C Zumajo-Cardona, DP Little, D Stevenson… - Scientific Reports, 2021 - nature.com
Although the seed is a key morphological innovation, its origin remains unknown and
molecular data outside angiosperms is still limited. Ginkgo biloba, with a unique place in …

RNA-Seq in nonmodel organisms

V Chalifa-Caspi - Deep Sequencing Data Analysis, 2021 - Springer
RNA-Seq is nowadays an indispensable approach for comparative transcriptome profiling in
model and nonmodel organisms. Analyzing RNA-Seq data from nonmodel organisms poses …

From whole bodies to single cells: A guide to transcriptomic approaches for ecology and evolutionary biology

KM Hoedjes, S Grath, N Posnien, MG Ritchie… - Molecular …, 2024 - Wiley Online Library
RNA sequencing (RNAseq) methodology has experienced a burst of technological
developments in the last decade, which has opened up opportunities for studying the …

[HTML][HTML] Divergence of cochlear transcriptomics between reference‑based and reference‑free transcriptome analyses among Rhinolophus ferrumequinum …

X Shi, J Li, T Liu, H Zhao, H Leng, K Sun, J Feng - Plos one, 2023 - journals.plos.org
Differences in gene expression within tissues can lead to differences in tissue function.
Understanding the transcriptome of a species helps elucidate the molecular mechanisms …

[HTML][HTML] Genome-Wide identification and analysis of small nucleolar RNAs and their roles in regulating latex regeneration in the rubber tree (Hevea brasiliensis)

X Chen, Z Deng, D Yu, X Zhang, Z An, W Wu… - Frontiers in Plant …, 2021 - frontiersin.org
Small nucleolar RNAs (snoRNAs) are a class of conserved nuclear RNAs that play important
roles in the modification of ribosomal RNAs (rRNAs) in plants. In rubber trees, rRNAs are run …

HeveaDB: a hub for rubber tree genetic and genomic resources

H Cheng - The rubber tree genome, 2020 - Springer
With rapid research advances in the genome of the Hevea brasiliensis rubber tree, more
genomic and transcriptomic data have been generated. However, these data are still …

[PDF][PDF] 大豆孢囊线虫大豆和烟草群体的转录组比较分析

宋雯雯, 齐娜伟, 梁晨, 段方猛… - 农业生物技术 …, 2018 - journal05.magtech.org.cn
摘要大豆孢囊线虫(Heterodera glycines, soybean cyst nematode, SCN)
为植物专性内寄生线虫, 主要危害大豆(Glycine max) 等豆科植物, 烟草(Nicotiana tabacum) …

The Reyan 7-33-97 rubber tree genome: insight into its structure, composition and application

H Cheng, C Tang, H Huang - The Rubber Tree Genome, 2020 - Springer
The Hevea brasiliensis rubber tree is an important industrial crop that is widely planted in
the tropical regions. China has a rubber planting history of more than 100 years and has …

Identificación de genes a partir de transcriptomas en peces de extensivo uso comercial. Aplicaciones para acuicultura

JM Cabrera, C Bachetta, DE Elías… - Ciencia, Docencia y …, 2023 - pcient.uner.edu.ar
La acuicultura, y dentro de ella la piscicultura, son alternativas productivas que además de
generar ingresos económicos, se utilizan como alternativa para disminuir el impacto de la …