[HTML][HTML] Gut microbiota profiling: metabolomics based approach to unravel compounds affecting human health

P Vernocchi, F Del Chierico, L Putignani - Frontiers in microbiology, 2016 - frontiersin.org
The gut microbiota is composed of a huge number of different bacteria, that produce a large
amount of compounds playing a key role in microbe selection and in the construction of a …

Seaweed components as potential modulators of the gut microbiota

E Shannon, M Conlon, M Hayes - Marine Drugs, 2021 - mdpi.com
Macroalgae, or seaweeds, are a rich source of components which may exert beneficial
effects on the mammalian gut microbiota through the enhancement of bacterial diversity and …

Stable-isotope probing of human and animal microbiome function

D Berry, A Loy - Trends in microbiology, 2018 - cell.com
Humans and animals host diverse communities of microorganisms important to their
physiology and health. Despite extensive sequencing-based characterization of host …

[HTML][HTML] Moving beyond descriptive studies: harnessing metabolomics to elucidate the molecular mechanisms underpinning host-microbiome phenotypes

SL Bishop, M Drikic, S Wacker, YY Chen… - Mucosal …, 2022 - Elsevier
Advances in technology and software have radically expanded the scope of metabolomics
studies and allow us to monitor a broad transect of central carbon metabolism in routine …

The Simplified Human Intestinal Microbiota (SIHUMIx) Shows High Structural and Functional Resistance against Changing Transit Times in In Vitro Bioreactors

SS Schäpe, JL Krause, B Engelmann, K Fritz-Wallace… - Microorganisms, 2019 - mdpi.com
Many functions in host–microbiota interactions are potentially influenced by intestinal transit
times, but little is known about the effects of altered transition times on the composition and …

Raman biosensor and molecular tools for integrated monitoring of pathogens and antimicrobial resistance in wastewater

L Cui, HZ Li, K Yang, LJ Zhu, F Xu, YG Zhu - TrAC Trends in Analytical …, 2021 - Elsevier
Pathogens and antimicrobial resistance (AMR) are emerging as major global threats to
public health. Wastewater, as the unique interface between environments and humans …

Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use

JL Krause, SS Schaepe, K Fritz-Wallace… - Gut …, 2020 - Taylor & Francis
Diverse intestinal microbiota is frequently used in in vitro bioreactor models to study the
effects of diet, chemical contaminations, or medication. However, the reproducible cultivation …

Monitoring the diversity and metabolic shift of gut microbes during green tea feeding in an in vitro human colonic model

M Xu, K Yang, J Zhu - Molecules, 2020 - mdpi.com
The human gut microbiome plays an important role in human health, and many factors such
as environment, host genetics, age, and diet have been found to influence the microbial …

Disease development is accompanied by changes in bacterial protein abundance and functions in a refined model of dextran sulfate sodium (DSS)-induced colitis

SB Haange, N Jehmlich, M Hoffmann… - Journal of proteome …, 2019 - ACS Publications
Using the acute dextran sulfate sodium (DSS)-induced colitis model, studies have
demonstrated that intestinal inflammation is accompanied by major changes in the …

Culturing human gut microbiomes in the laboratory

S Renwick, CM Ganobis, RA Elder… - Annual Review of …, 2021 - annualreviews.org
The human gut microbiota is a complex community of prokaryotic and eukaryotic microbes
and viral particles that is increasingly associated with many aspects of host physiology and …