Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging

S Fu, W Shi, T Luo, Y He, L Zhou, J Yang, Z Yang… - Nature …, 2023 - nature.com
Single-molecule localization microscopy in a typical wide-field setup has been widely used
for investigating subcellular structures with super resolution; however, field-dependent …

DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning

E Nehme, D Freedman, R Gordon, B Ferdman… - Nature …, 2020 - nature.com
An outstanding challenge in single-molecule localization microscopy is the accurate and
precise localization of individual point emitters in three dimensions in densely labeled …

Fluorescence Microscopy: a statistics-optics perspective

M Fazel, KS Grussmayer, B Ferdman, A Radenovic… - Reviews of Modern …, 2024 - APS
Fundamental properties of light unavoidably impose features on images collected using
fluorescence microscopes. Accounting for these features is often critical in quantitatively …

Dipole-spread-function engineering for simultaneously measuring the 3D orientations and 3D positions of fluorescent molecules

T Wu, J Lu, MD Lew - Optica, 2022 - opg.optica.org
Interactions between biomolecules are characterized by where they occur and how they are
organized, eg, the alignment of lipid molecules to form a membrane. However, spatial and …

Learning optimal wavefront shaping for multi-channel imaging

E Nehme, B Ferdman, LE Weiss, T Naor… - … on Pattern Analysis …, 2021 - ieeexplore.ieee.org
Fast acquisition of depth information is crucial for accurate 3D tracking of moving objects.
Snapshot depth sensing can be achieved by wavefront coding, in which the point-spread …

Practical sensorless aberration estimation for 3D microscopy with deep learning

D Saha, U Schmidt, Q Zhang, A Barbotin, Q Hu, N Ji… - Optics express, 2020 - opg.optica.org
Estimation of optical aberrations from volumetric intensity images is a key step in sensorless
adaptive optics for 3D microscopy. Recent approaches based on deep learning promise …

3D printable diffractive optical elements by liquid immersion

R Orange-Kedem, E Nehme, LE Weiss… - Nature …, 2021 - nature.com
Diffractive optical elements (DOEs) are used to shape the wavefront of incident light. This
can be used to generate practically any pattern of interest, albeit with varying efficiency. A …

Combining deep learning approaches and point spread function engineering for simultaneous 3D position and 3D orientation measurements of fluorescent single …

P Jouchet, AR Roy, WE Moerner - Optics communications, 2023 - Elsevier
Abstract Point Spread Function (PSF) engineering is an effective method to increase the
sensitivity of single-molecule fluorescence images to specific parameters. Classical phase …

Recent advances in point spread function engineering and related computational microscopy approaches: from one viewpoint

Y Shechtman - Biophysical reviews, 2020 - Springer
This personal hybrid review piece, written in light of my recipience of the UIPAB 2020 young
investigator award, contains a mixture of my scientific biography and work so far. This paper …

Deep learning-based adaptive optics for light sheet fluorescence microscopy

MR Rai, C Li, HT Ghashghaei… - Biomedical Optics …, 2023 - opg.optica.org
Light sheet fluorescence microscopy (LSFM) is a high-speed imaging technique that is often
used to image intact tissue-cleared specimens with cellular or subcellular resolution. Like …