[HTML][HTML] Fateful Decisions of Where to Cut the Line: Pathology Associated with Aberrant 3′ End Processing and Transcription Termination

P Grzechnik, HE Mischo - Journal of molecular biology, 2025 - Elsevier
Aberrant gene expression lies at the heart of many pathologies. This review will point out
how 3′ end processing, the final mRNA-maturation step in the transcription cycle, is …

Architects and Partners: The Dual Roles of Non-coding RNAs in Gene Fusion Events

R Dorney, L Reis-das-Mercês, U Schmitz - Computational Biology of Non …, 2024 - Springer
Extensive research into gene fusions in cancer and other diseases has led to the discovery
of novel biomarkers and therapeutic targets. Concurrently, various bioinformatics tools have …

Deep mutational scanning of CYP2C19 in human cells reveals a substrate specificity-abundance tradeoff

GE Boyle, KA Sitko, JG Galloway, HK Haddox… - Genetics, 2024 - academic.oup.com
The cytochrome P450s enzyme family metabolizes∼ 80% of small molecule drugs. Variants
in cytochrome P450s can substantially alter drug metabolism, leading to improper dosing …

Evolutionary analysis of TIR-and non-TIR-NBS-LRR disease resistance genes in wild strawberries

N Zhu, Y Feng, G Shi, Q Zhang, B Yuan… - Frontiers in Plant …, 2024 - frontiersin.org
Introduction NBS-LRR genes (NLRs) are the most extensive category of plant resistance
genes (R genes) and play a crucial role in pathogen defense. Understanding the diversity …

Characterizing nascent transcription patterns of PROMPTs, eRNAs, and readthrough transcripts in the ENCODE4 deeply profiled cell lines

A McShane, IV Narayanan, MT Paulsen, M Ashaka… - bioRxiv, 2024 - biorxiv.org
Arising as co-products of canonical gene expression, transcription-associated lincRNAs,
such as promoter upstream transcripts (PROMPTs), enhancer RNAs (eRNAs), and …

Vascularized characteristics and functional regeneration of three-dimensional cell reconstruction of oral mucosa equivalents based on vascular homeostasis …

L Shi, Y Xu, J Li, L He, K Li, S Yin… - Journal of Tissue …, 2024 - journals.sagepub.com
Our prior research has effectively developed tissue-engineered vascularized oral mucosa
equivalents (VOME); however, challenges such as low repeatability and stability, as well as …

Co-treatment with melatonin and ortho-topolin riboside exhibits anti-proliferation activity in radioresistant MDA-MB-231 cells by altering metabolic and transcriptomic …

SW Noh, DK Kim, SM Nam, J Yeu, S Lee… - Biochemical and …, 2025 - Elsevier
Radiation therapy represents the primary treatment option for triple-negative breast cancer.
However, radio resistance is associated with a poor prognosis and an increased risk of …

Comparative genomics of macaques and integrated insights into genetic variation and population history

S Zhang, N Xu, L Fu, X Yang, Y Li, Z Yang, Y Feng… - bioRxiv, 2024 - biorxiv.org
The crab-eating macaques (Macaca fascicularis) and rhesus macaques (M. mulatta) are
widely studied nonhuman primates in biomedical and evolutionary research. Despite their …

Topoisomerase regulation in the interplay between DNA transcription and replication

J Grosser - 2024 - openarchive.ki.se
During DNA-involving processes such as transcription and replication the double helix is
subjected to torsional stress. The over-or under-winding that encompasses torsional stress …