Dynamic alternative DNA structures in biology and disease

G Wang, KM Vasquez - Nature Reviews Genetics, 2023 - nature.com
Repetitive elements in the human genome, once considered 'junk DNA', are now known to
adopt more than a dozen alternative (that is, non-B) DNA structures, such as self-annealed …

DNA G-quadruplex structures: more than simple roadblocks to transcription?

J Robinson, F Raguseo, SP Nuccio… - Nucleic acids …, 2021 - academic.oup.com
It has been> 20 years since the formation of G-quadruplex (G4) secondary structures in
gene promoters was first linked to the regulation of gene expression. Since then, the …

Genome-wide mapping of i-motifs reveals their association with transcription regulation in live human cells

I Zanin, E Ruggiero, G Nicoletto, S Lago… - Nucleic Acids …, 2023 - academic.oup.com
Abstract i-Motifs (iMs) are four-stranded DNA structures that form at cytosine (C)-rich
sequences in acidic conditions in vitro. Their formation in cells is still under debate. We …

Intertwining roles of R-loops and G-quadruplexes in DNA repair, transcription and genome organization

P Wulfridge, K Sarma - Nature Cell Biology, 2024 - nature.com
R-loops are three-stranded nucleic acid structures that are abundant and widespread across
the genome and that have important physiological roles in many nuclear processes. Their …

[HTML][HTML] Noncanonical DNA structures are drivers of genome evolution

KD Makova, MH Weissensteiner - Trends in Genetics, 2023 - cell.com
In addition to the canonical right-handed double helix, other DNA structures, termed 'non-B
DNA', can form in the genomes across the tree of life. Non-B DNA regulates multiple cellular …

Sequencing and characterizing short tandem repeats in the human genome

HA Tanudisastro, IW Deveson, H Dashnow… - Nature Reviews …, 2024 - nature.com
Short tandem repeats (STRs) are highly polymorphic sequences throughout the human
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …

Genome-wide mapping of G-quadruplex structures with CUT&Tag

J Lyu, R Shao, PY Kwong Yung… - Nucleic acids …, 2022 - academic.oup.com
Single-stranded genomic DNA can fold into G-quadruplex (G4) structures or form DNA: RNA
hybrids (R loops). Recent evidence suggests that such non-canonical DNA structures affect …

G-quadruplex DNA structures in human stem cells and differentiation

KG Zyner, A Simeone, SM Flynn, C Doyle… - Nature …, 2022 - nature.com
The establishment of cell identity during embryonic development involves the activation of
specific gene expression programmes and is underpinned by epigenetic factors including …

G-quadruplexes and their ligands: Biophysical methods to unravel G-quadruplex/ligand interactions

T Santos, GF Salgado, EJ Cabrita, C Cruz - Pharmaceuticals, 2021 - mdpi.com
Progress in the design of G-quadruplex (G4) binding ligands relies on the availability of
approaches that assess the binding mode and nature of the interactions between G4 …

[HTML][HTML] Multimeric G-quadruplexes: A review on their biological roles and targeting

I Frasson, V Pirota, SN Richter, F Doria - International Journal of Biological …, 2022 - Elsevier
In human cells, nucleic acids adopt several non-canonical structures that regulate key
cellular processes. Among them, G-quadruplexes (G4s) are stable structures that form in …