Scalable functional assays for the interpretation of human genetic variation
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …
hundreds of thousands of coding and noncoding genetic variants in the human genome …
Accurate proteome-wide missense variant effect prediction with AlphaMissense
The vast majority of missense variants observed in the human genome are of unknown
clinical significance. We present AlphaMissense, an adaptation of AlphaFold fine-tuned on …
clinical significance. We present AlphaMissense, an adaptation of AlphaFold fine-tuned on …
Proteingym: Large-scale benchmarks for protein fitness prediction and design
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins to address our most pressing …
understanding genetic disease to designing novel proteins to address our most pressing …
Folate-dependent hypermobility syndrome: A proposed mechanism and diagnosis
J Courseault, C Kingry, V Morrison, C Edstrom… - Heliyon, 2023 - cell.com
Hypermobility involves excessive flexibility and systemic manifestations of connective tissue
fragility. We propose a folate-dependent hypermobility syndrome model based on clinical …
fragility. We propose a folate-dependent hypermobility syndrome model based on clinical …
Updated benchmarking of variant effect predictors using deep mutational scanning
BJ Livesey, JA Marsh - Molecular systems biology, 2023 - embopress.org
The assessment of variant effect predictor (VEP) performance is fraught with biases
introduced by benchmarking against clinical observations. In this study, building on our …
introduced by benchmarking against clinical observations. In this study, building on our …
[HTML][HTML] Improved pathogenicity prediction for rare human missense variants
The success of personalized genomic medicine depends on our ability to assess the
pathogenicity of rare human variants, including the important class of missense variation …
pathogenicity of rare human variants, including the important class of missense variation …
A comprehensive map of human glucokinase variant activity
Background Glucokinase (GCK) regulates insulin secretion to maintain appropriate blood
glucose levels. Sequence variants can alter GCK activity to cause hyperinsulinemic …
glucose levels. Sequence variants can alter GCK activity to cause hyperinsulinemic …
Cross-protein transfer learning substantially improves disease variant prediction
Background Genetic variation in the human genome is a major determinant of individual
disease risk, but the vast majority of missense variants have unknown etiological effects …
disease risk, but the vast majority of missense variants have unknown etiological effects …
[HTML][HTML] Genome-scale mapping of DNA damage suppressors through phenotypic CRISPR-Cas9 screens
To maintain genome integrity, cells must accurately duplicate their genome and repair DNA
lesions when they occur. To uncover genes that suppress DNA damage in human cells, we …
lesions when they occur. To uncover genes that suppress DNA damage in human cells, we …
[HTML][HTML] Proteingym: Large-scale benchmarks for protein design and fitness prediction
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins that can address our most …
understanding genetic disease to designing novel proteins that can address our most …