[HTML][HTML] Analysis of polyphosphate in mammalian cells and tissues: methods, functions and challenges

GA Kullik, M Waldmann, T Renné - Current Opinion in Biotechnology, 2024 - Elsevier
Polyphosphates play a crucial role in various biological processes, such as blood
coagulation, energy homeostasis, and cellular stress response. However, their isolation …

DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning

J Wang, M Horlacher, L Cheng, O Winther - Bioinformatics, 2024 - academic.oup.com
Motivation Accurate prediction of RNA subcellular localization plays an important role in
understanding cellular processes and functions. Although post-transcriptional processes are …

Noncanonical microprotein regulation of immunity

C Nichols, DC Peltier - Molecular Therapy, 2024 - cell.com
The immune system is highly regulated but, when dysregulated, suboptimal protective or
overly robust immune responses can lead to immune-mediated disorders. The genetic and …

Diagnostic Prediction of portal vein thrombosis in chronic cirrhosis patients using data-driven precision medicine model

Y Li, J Gao, X Zheng, G Nie, J Qin… - Briefings in …, 2024 - academic.oup.com
Background Portal vein thrombosis (PVT) is a significant issue in cirrhotic patients,
necessitating early detection. This study aims to develop a data-driven predictive model for …

SubCELL: the landscape of subcellular compartment-specific molecular interactions

Y Zhang, W Jiang, T Li, H Xu, Y Zhu… - Nucleic Acids …, 2025 - academic.oup.com
The subcellular compartment-specific molecular interactions (SCSIs) are the building blocks
for most molecular functions, biological processes and disease pathogeneses. Extensive …

KCNN4 as a Genomic Determinant of Cytosolic Delivery by the Attenuated Cationic Lytic Peptide L17E

M Kuriyama, H Hirose, Y Kawaguchi, J Michibata… - Molecular Therapy, 2025 - cell.com
The development of a cytosolic delivery strategy for biopharmaceuticals is one of the central
issues in drug development. Knowledge of the mechanisms underlying these processes …

[HTML][HTML] Membrane-associated mRNAs: a post-transcriptional pathway for fine-turning gene expression

S Chen, MA Collart - Journal of Molecular Biology, 2024 - Elsevier
Gene expression is a fundamental and highly regulated process involving a series of tightly
coordinated steps, including transcription, post-transcriptional processing, translation, and …

CapsNet-TIS: Predicting translation initiation site based on multi-feature fusion and improved capsule network

Y Chen, G Sheng, G Wang - Gene, 2024 - Elsevier
Genes are the basic units of protein synthesis in organisms, and accurately identifying the
translation initiation site (TIS) of genes is crucial for understanding the regulation …

[HTML][HTML] Studying relative RNA localization From nucleus to the cytosol

VF Ntasis, R Guigó - bioRxiv, 2024 - ncbi.nlm.nih.gov
The precise coordination of important biological processes, such as differentiation and
development, is highly dependent on the regulation of expression of the genetic information …

[HTML][HTML] Pharmacological inhibition of tyrosine protein-kinase 2 reduces islet inflammation and delays type 1 diabetes onset in mice

F Syed, O Ballew, CC Lee, J Rana, P Krishnan… - bioRxiv, 2024 - ncbi.nlm.nih.gov
SUMMARY Tyrosine protein-kinase 2 (TYK2), a member of the Janus kinase family,
mediates inflammatory signaling through multiple cytokines, including interferon-α (IFNα) …