Principles for integrative structural biology studies

MP Rout, A Sali - Cell, 2019 - cell.com
Integrative structure determination is a powerful approach to modeling the structures of
biological systems based on data produced by multiple experimental and theoretical …

Adding a new separation dimension to MS and LC–MS: what is the utility of ion mobility spectrometry?

V d'Atri, T Causon, O Hernandez‐Alba… - Journal of separation …, 2018 - Wiley Online Library
Ion mobility spectrometry is an analytical technique known for more than 100 years, which
entails separating ions in the gas phase based on their size, shape, and charge. While ion …

Reconstitution of an intact clock reveals mechanisms of circadian timekeeping

AG Chavan, JA Swan, J Heisler, C Sancar, DC Ernst… - Science, 2021 - science.org
INTRODUCTION Circadian clocks provide an internal representation of local time inside
cells and control the timing of gene expression in anticipation of sunrise and sunset. In …

Circadian rhythms in cyanobacteria

SE Cohen, SS Golden - Microbiology and Molecular Biology …, 2015 - Am Soc Microbiol
Life on earth is subject to daily and predictable fluctuations in light intensity, temperature,
and humidity created by rotation of the earth. Circadian rhythms, generated by a circadian …

Structural basis of the day-night transition in a bacterial circadian clock

R Tseng, NF Goularte, A Chavan, J Luu, SE Cohen… - Science, 2017 - science.org
Circadian clocks are ubiquitous timing systems that induce rhythms of biological activities in
synchrony with night and day. In cyanobacteria, timing is generated by a posttranslational …

A protein fold switch joins the circadian oscillator to clock output in cyanobacteria

YG Chang, SE Cohen, C Phong, WK Myers, YI Kim… - Science, 2015 - science.org
Organisms are adapted to the relentless cycles of day and night, because they evolved
timekeeping systems called circadian clocks, which regulate biological activities with~ 24 …

Outcome of the first wwPDB hybrid/integrative methods task force workshop

A Sali, HM Berman, T Schwede, J Trewhella… - Structure, 2015 - cell.com
Structures of biomolecular systems are increasingly computed by integrative modeling that
relies on varied types of experimental data and theoretical information. We describe here the …

Applications of hydrogen/deuterium exchange MS from 2012 to 2014

GF Pirrone, RE Iacob, JR Engen - Analytical chemistry, 2015 - ACS Publications
Hydrogen/deuterium exchange (HDX) detected by mass spectrometry (MS) is extraordinarily
useful in the study of many aspects of proteins, especially the analysis of protein …

Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state

J Snijder, JM Schuller, A Wiegard, P Lössl… - Science, 2017 - science.org
Cyanobacteria have a robust circadian oscillator, known as the Kai system. Reconstituted
from the purified protein components KaiC, KaiB, and KaiA, it can tick autonomously in the …

Protein dynamics and conformational changes explored by hydrogen/deuterium exchange mass spectrometry

J Zheng, T Strutzenberg, BD Pascal… - Current opinion in …, 2019 - Elsevier
Highlights•Introductory bases and equations of HDX-MS.•Protein dynamics explored by
HDX-MS.•Representative case studies that measured by HDX-MS.•Future directions of HDX …