Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Protein‐protein interaction networks as miners of biological discovery

S Wang, R Wu, J Lu, Y Jiang, T Huang, YD Cai - Proteomics, 2022 - Wiley Online Library
Protein‐protein interactions (PPIs) form the basis of a myriad of biological pathways and
mechanism, such as the formation of protein complexes or the components of signaling …

TTD: Therapeutic Target Database describing target druggability information

Y Zhou, Y Zhang, D Zhao, X Yu, X Shen… - Nucleic acids …, 2024 - academic.oup.com
Target discovery is one of the essential steps in modern drug development, and the
identification of promising targets is fundamental for developing first-in-class drug. A variety …

SAveRUNNER: an R-based tool for drug repurposing

G Fiscon, P Paci - BMC bioinformatics, 2021 - Springer
Background Currently, no proven effective drugs for the novel coronavirus disease COVID-
19 exist and despite widespread vaccination campaigns, we are far short from herd …

[HTML][HTML] Drug repurposing: a network-based approach to amyotrophic lateral sclerosis

G Fiscon, F Conte, S Amadio, C Volonté, P Paci - Neurotherapeutics, 2021 - Elsevier
The continuous adherence to the conventional “one target, one drug” paradigm has failed so
far to provide effective therapeutic solutions for heterogeneous and multifactorial diseases …

[HTML][HTML] Molecular interaction networks and drug development: Novel approach to drug target identification and drug repositioning

J Loscalzo - The FASEB Journal, 2023 - ncbi.nlm.nih.gov
Conventional drug discovery requires identifying a protein target believed to be important for
disease mechanism and screening compounds for those that beneficially alter the target's …

BIONIC: biological network integration using convolutions

DT Forster, SC Li, Y Yashiroda, M Yoshimura, Z Li… - Nature …, 2022 - nature.com
Biological networks constructed from varied data can be used to map cellular function, but
each data type has limitations. Network integration promises to address these limitations by …

Comprehensive network medicine-based drug repositioning via integration of therapeutic efficacy and side effects

P Paci, G Fiscon, F Conte, RS Wang… - npj Systems Biology …, 2022 - nature.com
Despite advances in modern medicine that led to improvements in cardiovascular outcomes,
cardiovascular disease (CVD) remains the leading cause of mortality and morbidity globally …

[HTML][HTML] In silico drug repurposing in COVID-19: A network-based analysis

P Sibilio, S Bini, G Fiscon, M Sponziello, F Conte… - Biomedicine & …, 2021 - Elsevier
The SARS-CoV-2 pandemic is a worldwide public health emergency. Despite the beginning
of a vaccination campaign, the search for new drugs to appropriately treat COVID-19 …

Uncovering protein networks in cardiovascular proteomics

M Hasman, M Mayr, K Theofilatos - Molecular & Cellular Proteomics, 2023 - ASBMB
Biological networks have been widely used in many different diseases to identify potential
biomarkers and design drug targets. In the present review, we describe the main …