NCBI Taxonomy: a comprehensive update on curation, resources and tools

CL Schoch, S Ciufo, M Domrachev, CL Hotton… - Database, 2020 - academic.oup.com
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …

Structural biology and evolution of the TGF-β family

AP Hinck, TD Mueller… - Cold Spring Harbor …, 2016 - cshperspectives.cshlp.org
We review the evolution and structure of members of the transforming growth factor β (TGF-
β) family, antagonistic or agonistic modulators, and receptors that regulate TGF-β signaling …

Revisiting metazoan phylogeny with genomic sampling of all phyla

CE Laumer, R Fernández, S Lemer… - … of the royal …, 2019 - royalsocietypublishing.org
Proper biological interpretation of a phylogeny can sometimes hinge on the placement of
key taxa—or fail when such key taxa are not sampled. In this light, we here present the first …

A large and consistent phylogenomic dataset supports sponges as the sister group to all other animals

P Simion, H Philippe, D Baurain, M Jager, DJ Richter… - Current biology, 2017 - cell.com
Resolving the early diversification of animal lineages has proven difficult, even using
genome-scale datasets. Several phylogenomic studies have supported the classical …

Contentious relationships in phylogenomic studies can be driven by a handful of genes

XX Shen, CT Hittinger, A Rokas - Nature ecology & evolution, 2017 - nature.com
Phylogenomic studies have resolved countless branches of the tree of life, but remain
strongly contradictory on certain, contentious relationships. Here, we use a maximum …

A higher level classification of all living organisms

MA Ruggiero, DP Gordon, TM Orrell, N Bailly… - PloS one, 2015 - journals.plos.org
We present a consensus classification of life to embrace the more than 1.6 million species
already provided by more than 3,000 taxonomists' expert opinions in a unified and coherent …

Improved modeling of compositional heterogeneity supports sponges as sister to all other animals

R Feuda, M Dohrmann, W Pett, H Philippe… - Current Biology, 2017 - cell.com
The relationships at the root of the animal tree have proven difficult to resolve, with the
current debate focusing on whether sponges (phylum Porifera) or comb jellies (phylum …

The ctenophore genome and the evolutionary origins of neural systems

LL Moroz, KM Kocot, MR Citarella, S Dosung… - Nature, 2014 - nature.com
The origins of neural systems remain unresolved. In contrast to other basal metazoans,
ctenophores (comb jellies) have both complex nervous and mesoderm-derived muscular …

Early metazoan cell type diversity and the evolution of multicellular gene regulation

A Sebé-Pedrós, E Chomsky, K Pang… - Nature ecology & …, 2018 - nature.com
A hallmark of metazoan evolution is the emergence of genomic mechanisms that implement
cell-type-specific functions. However, the evolution of metazoan cell types and their …

Syncytial nerve net in a ctenophore adds insights on the evolution of nervous systems

P Burkhardt, J Colgren, A Medhus, L Digel, B Naumann… - Science, 2023 - science.org
A fundamental breakthrough in neurobiology has been the formulation of the neuron
doctrine by Santiago Ramón y Cajal, which stated that the nervous system is composed of …