Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs
Long noncoding RNAs (lncRNAs) are a large and diverse class of genes in eukaryotic
genomes that contribute to a variety of regulatory processes. Functionally characterized …
genomes that contribute to a variety of regulatory processes. Functionally characterized …
Long non-coding RNA (lncRNA) roles in cell biology, neurodevelopment and neurological disorders
V Aliperti, J Skonieczna, A Cerase - Non-coding RNA, 2021 - mdpi.com
Development is a complex process regulated both by genetic and epigenetic and
environmental clues. Recently, long non-coding RNAs (lncRNAs) have emerged as key …
environmental clues. Recently, long non-coding RNAs (lncRNAs) have emerged as key …
lncLocator 2.0: a cell-line-specific subcellular localization predictor for long non-coding RNAs with interpretable deep learning
Abstract Motivation Long non-coding RNAs (lncRNAs) are generally expressed in a tissue-
specific way, and subcellular localizations of lncRNAs depend on the tissues or cell lines …
specific way, and subcellular localizations of lncRNAs depend on the tissues or cell lines …
GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation
The subcellular localization of long non-coding RNAs (lncRNAs) is crucial for understanding
lncRNA functions. Most of existing lncRNA subcellular localization prediction methods use k …
lncRNA functions. Most of existing lncRNA subcellular localization prediction methods use k …
TACOS: a novel approach for accurate prediction of cell-specific long noncoding RNAs subcellular localization
Long noncoding RNAs (lncRNAs) are primarily regulated by their cellular localization, which
is responsible for their molecular functions, including cell cycle regulation and genome …
is responsible for their molecular functions, including cell cycle regulation and genome …
RNA trafficking and subcellular localization—a review of mechanisms, experimental and predictive methodologies
RNA localization is essential for regulating spatial translation, where RNAs are trafficked to
their target locations via various biological mechanisms. In this review, we discuss RNA …
their target locations via various biological mechanisms. In this review, we discuss RNA …
LncLocFormer: a Transformer-based deep learning model for multi-label lncRNA subcellular localization prediction by using localization-specific attention mechanism
Motivation There is mounting evidence that the subcellular localization of lncRNAs can
provide valuable insights into their biological functions. In the real world of transcriptomes …
provide valuable insights into their biological functions. In the real world of transcriptomes …
Suppression of lncRNA NLRP3 inhibits NLRP3-triggered inflammatory responses in early acute lung injury
D Luo, W Dai, X Feng, C Ding, Q Shao, R Xiao… - Cell Death & …, 2021 - nature.com
Acute lung injury (ALI) is a common lung pathology that is accompanied by alveolar
macrophage (AM) activation and inflammatory response. This study investigated the role of …
macrophage (AM) activation and inflammatory response. This study investigated the role of …
GM-lncLoc: LncRNAs subcellular localization prediction based on graph neural network with meta-learning
J Cai, T Wang, X Deng, L Tang, L Liu - BMC genomics, 2023 - Springer
In recent years, a large number of studies have shown that the subcellular localization of
long non-coding RNAs (lncRNAs) can bring crucial information to the recognition of …
long non-coding RNAs (lncRNAs) can bring crucial information to the recognition of …
Aid or antagonize: nuclear long noncoding RNAs regulate host responses and outcomes of viral infections
V Kulkarni, S Jayakumar, M Mohan, S Kulkarni - Cells, 2023 - mdpi.com
Long noncoding RNAs (lncRNAs) are transcripts measuring> 200 bp in length and devoid of
protein-coding potential. LncRNAs exceed the number of protein-coding mRNAs and …
protein-coding potential. LncRNAs exceed the number of protein-coding mRNAs and …