The physiology of alternative splicing

LE Marasco, AR Kornblihtt - Nature Reviews Molecular Cell Biology, 2023 - nature.com
Alternative splicing is a substantial contributor to the high complexity of transcriptomes of
multicellular eukaryotes. In this Review, we discuss the accumulated evidence that most of …

Alternative splicing as a source of phenotypic diversity

CJ Wright, CWJ Smith, CD Jiggins - Nature Reviews Genetics, 2022 - nature.com
A major goal of evolutionary genetics is to understand the genetic processes that give rise to
phenotypic diversity in multicellular organisms. Alternative splicing generates multiple …

Alternative splicing regulatory networks: functions, mechanisms, and evolution

J Ule, BJ Blencowe - Molecular cell, 2019 - cell.com
High-throughput sequencing-based methods and their applications in the study of
transcriptomes have revolutionized our understanding of alternative splicing. Networks of …

[HTML][HTML] Stem cell programs in cancer initiation, progression, and therapy resistance

T Huang, X Song, D Xu, D Tiek, A Goenka, B Wu… - Theranostics, 2020 - ncbi.nlm.nih.gov
Over the past few decades, substantial evidence has convincingly revealed the existence of
cancer stem cells (CSCs) as a minor subpopulation in cancers, contributing to an aberrantly …

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

S Liu, Y Liu, X Yang, C Tong, D Edwards… - Nature …, 2014 - nature.com
Polyploidization has provided much genetic variation for plant adaptive evolution, but the
mechanisms by which the molecular evolution of polyploid genomes establishes genetic …

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

L Yan, M Yang, H Guo, L Yang, J Wu, R Li… - Nature structural & …, 2013 - nature.com
Measuring gene expression in individual cells is crucial for understanding the gene
regulatory network controlling human embryonic development. Here we apply single-cell …

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis

N Cabezas-Wallscheid, D Klimmeck, J Hansson… - Cell stem cell, 2014 - cell.com
In this study, we present integrated quantitative proteome, transcriptome, and methylome
analyses of hematopoietic stem cells (HSCs) and four multipotent progenitor (MPP) …

The circular RNA circBIRC6 participates in the molecular circuitry controlling human pluripotency

CY Yu, TC Li, YY Wu, CH Yeh, W Chiang… - Nature …, 2017 - nature.com
Accumulating evidence indicates that circular RNAs (circRNAs) are abundant in the human
transcriptome. However, their involvement in biological processes, including pluripotency …

Alternative splicing: a pivotal step between eukaryotic transcription and translation

AR Kornblihtt, IE Schor, M Alló, G Dujardin… - … reviews Molecular cell …, 2013 - nature.com
Alternative splicing was discovered simultaneously with splicing over three decades ago.
Since then, an enormous body of evidence has demonstrated the prevalence of alternative …

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues

A Reyes, W Huber - Nucleic acids research, 2018 - academic.oup.com
Most human genes generate multiple transcript isoforms. The differential expression of these
isoforms can help specify cell types. Diverse transcript isoforms arise from the use of …