In silico-based vaccine design against Ebola virus glycoprotein

R Dash, R Das, M Junaid, MFC Akash… - … and Applications in …, 2017 - Taylor & Francis
Ebola virus (EBOV) is one of the lethal viruses, causing more than 24 epidemic outbreaks to
date. Despite having available molecular knowledge of this virus, no definite vaccine or …

Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations

B Knapp, S Demharter, R Esmaielbeiki… - Briefings in …, 2015 - academic.oup.com
The interaction between T-cell receptors (TCRs) and major histocompatibility complex
(MHC)-bound epitopes is one of the most important processes in the adaptive human …

Identification of protective linear B-cell epitopes on the subolesin/akirin orthologues of Ornithodoros spp. soft ticks

R Manzano-Román, V Díaz-Martín, A Oleaga… - Vaccine, 2015 - Elsevier
Subolesin/akirin is a protective antigen that is highly conserved across hematophagous
vector species and is therefore potentially useful for the development of a universal vaccine …

Structure and dynamics of major histocompatibility class Ib molecule H2-M3 complexed with mitochondrial-derived peptides

A Strand, ST Shen, DR Tomchick, J Wang… - Journal of …, 2022 - Taylor & Francis
Presentation of antigenic peptides to T-cell receptors is an essential step in the adaptive
immune response. In the mouse the class Ib major histocompatibility complex molecule, H2 …

Dynamics determine signaling in a multicomponent system associated with rheumatoid arthritis

C Lindgren, M Tyagi, J Viljanen, J Toms… - Journal of Medicinal …, 2018 - ACS Publications
Strategies that target multiple components are usually required for treatment of diseases
originating from complex biological systems. The multicomponent system consisting of the …

Insights into the structure of the LC13 TCR/HLA-B8-EBV peptide complex with molecular dynamics simulations

A Stavrakoudis - Cell biochemistry and biophysics, 2011 - Springer
One key step in the immune response against infected or tumor cells is the recognition of the
T-cell receptor (TCR) by class I major histocompatibility complexes. The complex between …

[图书][B] Computational Immunology: Applications

S Ghosh - 2020 - taylorfrancis.com
Computational Immunology: Applications focuses on different mathematical models,
statistical tools, techniques, and computational modelling that helps in understanding …

A continuous peptide epitope reacting with pandemic influenza AH1N1 predicted by bioinformatic approaches

JP Carrillo‐Vazquez, J Correa‐Basurto… - Journal of Molecular …, 2015 - Wiley Online Library
Computational identification of potential epitopes with an immunogenic capacity challenges
immunological research. Several methods show considerable success, and together with …

[HTML][HTML] Cis–trans isomerization of the Epstein–Barr virus determinant peptide EENLLDFVRF after the DM1 TCR recognition of the HLA-B* 4405/peptide complex

A Stavrakoudis - FEBS letters, 2011 - Elsevier
The Epstein–Barr virus determinant peptide EENLLDFVRF shows high immunogenicity
when presented by HLA-B* 4405 allotype. This fact is accompanied by a cis–trans …

Homology modeling and molecular dynamics simulations of MUC1-9/H-2Kb complex suggest novel binding interactions

A Stavrakoudis, IG Tsoulos, K Uray, F Hudecz… - Journal of molecular …, 2011 - Springer
Human MUC1 is over-expressed in human adenocarcinomas and has been used as a
target for immunotherapy studies. The 9-mer MUC1-9 peptide has been identified as one of …