Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Endocrine resistance in breast cancer–an overview and update

R Clarke, JJ Tyson, JM Dixon - Molecular and cellular endocrinology, 2015 - Elsevier
Tumors that express detectable levels of the product of the ESR1 gene (estrogen receptor-α;
ERα) represent the single largest molecular subtype of breast cancer. More women …

Integrated proteogenomic characterization of human high-grade serous ovarian cancer

H Zhang, T Liu, Z Zhang, SH Payne, B Zhang… - Cell, 2016 - cell.com
To provide a detailed analysis of the molecular components and underlying mechanisms
associated with ovarian cancer, we performed a comprehensive mass-spectrometry-based …

From 'differential expression'to 'differential networking'–identification of dysfunctional regulatory networks in diseases

A de la Fuente - Trends in genetics, 2010 - cell.com
Understanding diseases requires identifying the differences between healthy and affected
tissues. Gene expression data have revolutionized the study of diseases by making it …

Early diagnosis of complex diseases by molecular biomarkers, network biomarkers, and dynamical network biomarkers

R Liu, X Wang, K Aihara, L Chen - Medicinal research reviews, 2014 - Wiley Online Library
Many studies have been carried out for early diagnosis of complex diseases by finding
accurate and robust biomarkers specific to respective diseases. In particular, recent rapid …

Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate

R Clarke, KL Cook, R Hu, COB Facey, I Tavassoly… - Cancer research, 2012 - AACR
How breast cancer cells respond to the stress of endocrine therapies determines whether
they will acquire a resistant phenotype or execute a cell-death pathway. After a survival …

Dynamic modelling of oestrogen signalling and cell fate in breast cancer cells

JJ Tyson, WT Baumann, C Chen, A Verdugo… - Nature Reviews …, 2011 - nature.com
Cancers of the breast and other tissues arise from aberrant decision-making by cells
regarding their survival or death, proliferation or quiescence, damage repair or bypass …

DINGO: differential network analysis in genomics

MJ Ha, V Baladandayuthapani, KA Do - Bioinformatics, 2015 - academic.oup.com
Motivation: Cancer progression and development are initiated by aberrations in various
molecular networks through coordinated changes across multiple genes and pathways. It is …

Regulation of head and neck squamous cancer stem cells by PI3K and SOX2

SB Keysar, PN Le, B Miller, BC Jackson… - Journal of the …, 2017 - academic.oup.com
Background: Not all breast cancer patients benefit from neoadjuvant or adjuvant therapy,
resulting in considerable undertreatment or overtreatment. New insights into the role of …

[HTML][HTML] Network biology and artificial intelligence drive the understanding of the multidrug resistance phenotype in cancer

B Bueschbell, AB Caniceiro, PMS Suzano… - Drug Resistance …, 2022 - Elsevier
Globally with over 10 million deaths per year, cancer is the most transversal disease across
countries, cultures, and ethnicities, affecting both developed and developing regions …