[HTML][HTML] Genome evolution and diversity of wild and cultivated potatoes

D Tang, Y Jia, J Zhang, H Li, L Cheng, P Wang, Z Bao… - Nature, 2022 - nature.com
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …

[PDF][PDF] The Chinese pine genome and methylome unveil key features of conifer evolution

S Niu, J Li, W Bo, W Yang, A Zuccolo, S Giacomello… - Cell, 2022 - cell.com
Conifers dominate the world's forest ecosystems and are the most widely planted tree
species. Their giant and complex genomes present great challenges for assembling a …

KaKs_Calculator 3.0: calculating selective pressure on coding and non-coding sequences

Z Zhang - Genomics, Proteomics and Bioinformatics, 2022 - academic.oup.com
Abstract KaKs_Calculator 3.0 is an updated toolkit that is capable of calculating selective
pressure on both coding and non-coding sequences. Similar to the nonsynonymous …

Brassica carinata genome characterization clarifies U's triangle model of evolution and polyploidy in Brassica

X Song, Y Wei, D Xiao, K Gong, P Sun, Y Ren… - Plant …, 2021 - academic.oup.com
Ethiopian mustard (Brassica carinata) in the Brassicaceae family possesses many excellent
agronomic traits. Here, the high-quality genome sequence of B. carinata is reported …

[HTML][HTML] Genome-wide signatures of adaptation to extreme environments in red algae

CH Cho, SI Park, TY Huang, Y Lee, C Ciniglia… - Nature …, 2023 - nature.com
The high temperature, acidity, and heavy metal-rich environments associated with hot
springs have a major impact on biological processes in resident cells. One group of …

[HTML][HTML] Genomic legacy of the African cheetah, Acinonyx jubatus

P Dobrynin, S Liu, G Tamazian, Z Xiong, AA Yurchenko… - Genome biology, 2015 - Springer
Background Patterns of genetic and genomic variance are informative in inferring population
history for human, model species and endangered populations. Results Here the genome …

[HTML][HTML] Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet

J Chen, Y Liu, M Liu, W Guo, Y Wang, Q He, W Chen… - Nature Genetics, 2023 - nature.com
Broomcorn millet (Panicum miliaceum L.) is an orphan crop with the potential to improve
cereal production and quality, and ensure food security. Here we present the genetic …

The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine

Y Wang, H Xin, P Fan, J Zhang, Y Liu, Y Dong… - The Plant …, 2021 - Wiley Online Library
Vitis amurensis (Shanputao) is the most cold tolerant Vitis species and so is of great interest
to grape breeders and producers in areas with low winter temperatures. Here, we report its …

[HTML][HTML] Genome-enabled discovery of anthraquinone biosynthesis in Senna tora

SH Kang, RP Pandey, CM Lee, JS Sim… - Nature …, 2020 - nature.com
Senna tora is a widely used medicinal plant. Its health benefits have been attributed to the
large quantity of anthraquinones, but how they are made in plants remains a mystery. To …

The functional evolution of architecturally different plant geranyl diphosphate synthases from geranylgeranyl diphosphate synthase

S Song, R Jin, Y Chen, S He, K Li, Q Tang… - The Plant …, 2023 - academic.oup.com
Terpenoids constitute the largest class of plant primary and secondary metabolites with a
broad range of biological and ecological functions. They are synthesized from isopentenyl …