Multi-omics data integration, interpretation, and its application

I Subramanian, S Verma, S Kumar… - … and biology insights, 2020 - journals.sagepub.com
To study complex biological processes holistically, it is imperative to take an integrative
approach that combines multi-omics data to highlight the interrelationships of the involved …

Supervised, unsupervised, and semi-supervised feature selection: a review on gene selection

JC Ang, A Mirzal, H Haron… - IEEE/ACM transactions …, 2015 - ieeexplore.ieee.org
Recently, feature selection and dimensionality reduction have become fundamental tools for
many data mining tasks, especially for processing high-dimensional data such as gene …

The c-Myc target gene network

CV Dang, KA O'Donnell, KI Zeller, T Nguyen… - Seminars in cancer …, 2006 - Elsevier
For more than a decade, numerous studies have suggested that the c-Myc oncogenic
protein is likely to broadly influence the composition of the transcriptome. However, the …

Epidermal growth factor receptor in glioma: signal transduction, neuropathology, imaging, and radioresistance

KJ Hatanpaa, S Burma, D Zhao, AA Habib - Neoplasia, 2010 - Elsevier
Aberrant epidermal growth factor receptor (EGFR) signaling is common in cancer. Increased
expression of wild type and mutant EGFR is a widespread feature of diverse types of cancer …

Protein kinase C and cancer: what we know and what we do not

R Garg, LG Benedetti, MB Abera, H Wang, M Abba… - Oncogene, 2014 - nature.com
Since their discovery in the late 1970s, protein kinase C (PKC) isozymes represent one of
the most extensively studied signaling kinases. PKCs signal through multiple pathways and …

p53 and Pten control neural and glioma stem/progenitor cell renewal and differentiation

H Zheng, H Ying, H Yan, AC Kimmelman, DJ Hiller… - Nature, 2008 - nature.com
Glioblastoma (GBM) is a highly lethal brain tumour presenting as one of two subtypes with
distinct clinical histories and molecular profiles. The primary GBM subtype presents acutely …

Cluster ensembles: A survey of approaches with recent extensions and applications

T Boongoen, N Iam-On - Computer Science Review, 2018 - Elsevier
Cluster ensembles have been shown to be better than any standard clustering algorithm at
improving accuracy and robustness across different data collections. This meta-learning …

Clustering cancer gene expression data: a comparative study

MCP De Souto, IG Costa, DS De Araujo, TB Ludermir… - BMC …, 2008 - Springer
Background The use of clustering methods for the discovery of cancer subtypes has drawn a
great deal of attention in the scientific community. While bioinformaticians have proposed …

Identification of noninvasive imaging surrogates for brain tumor gene-expression modules

M Diehn, C Nardini, DS Wang… - Proceedings of the …, 2008 - National Acad Sciences
Glioblastoma multiforme (GBM) is the most common and lethal primary brain tumor in adults.
We combined neuroimaging and DNA microarray analysis to create a multidimensional map …

Protein disulfide isomerase: a promising target for cancer therapy

S Xu, S Sankar, N Neamati - Drug discovery today, 2014 - Elsevier
Highlights•PDI is an important oxidase, reductase, isomerase and molecular
chaperone.•PDI expression is up-regulated in select types of cancers.•Silencing PDI results …