Biomarkers: Promising and valuable tools towards diagnosis, prognosis and treatment of Covid-19 and other diseases

A Bodaghi, N Fattahi, A Ramazani - Heliyon, 2023 - cell.com
The use of biomarkers as early warning systems in the evaluation of disease risk has
increased markedly in the last decade. Biomarkers are indicators of typical biological …

A guideline to univariate statistical analysis for LC/MS-based untargeted metabolomics-derived data

M Vinaixa, S Samino, I Saez, J Duran, JJ Guinovart… - Metabolites, 2012 - mdpi.com
Several metabolomic software programs provide methods for peak picking, retention time
alignment and quantification of metabolite features in LC/MS-based metabolomics …

Circadian orchestration of the hepatic proteome

AB Reddy, NA Karp, ES Maywood, EA Sage, M Deery… - Current Biology, 2006 - cell.com
Circadian rhythms are essential to health. Their disruption is associated with metabolic
diseases in experimental animals and man [1–3]. Local metabolic rhythms represent an …

Technical, experimental, and biological variations in isobaric tags for relative and absolute quantitation (iTRAQ)

CS Gan, PK Chong, TK Pham… - Journal of proteome …, 2007 - ACS Publications
We assess the reliability of isobaric-tags for relative and absolute quantitation (iTRAQ),
based on different types of replicate analyses taking into account technical, experimental …

Localization of organelle proteins by isotope tagging (LOPIT)

TPJ Dunkley, R Watson, JL Griffin, P Dupree… - Molecular & Cellular …, 2004 - ASBMB
We describe a proteomics method for determining the subcellular localization of membrane
proteins. Organelles are partially separated using centrifugation through self-generating …

Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1

R Spellman, M Llorian, CWJ Smith - Molecular cell, 2007 - cell.com
Among the targets of the repressive splicing regulator, polypyrimidine tract binding protein
(PTB) is its own pre-mRNA, where PTB-induced exon 11 skipping produces an RNA …

Difference gel electrophoresis

JF Timms, R Cramer - Proteomics, 2008 - Wiley Online Library
DIGE is a protein labelling and separation technique allowing quantitative proteomics of two
or more samples by optical fluorescence detection of differentially labelled proteins that are …

Proteolipid protein is required for transport of sirtuin 2 into CNS myelin

HB Werner, K Kuhlmann, S Shen… - Journal of …, 2007 - Soc Neuroscience
Mice lacking the expression of proteolipid protein (PLP)/DM20 in oligodendrocytes provide a
genuine model for spastic paraplegia (SPG-2). Their axons are well myelinated but exhibit …

Two-dimensional fluorescence difference gel electrophoresis for comparative proteomics profiling

NS Tannu, SE Hemby - Nature protocols, 2006 - nature.com
Quantitative proteomics is the workhorse of the modern proteomics initiative. The gel-based
and MuDPIT approaches have facilitated vital advances in the measurement of protein …

Back to the basics: maximizing the information obtained by quantitative two dimensional gel electrophoresis analyses by an appropriate experimental design and …

L Valledor, J Jorrín - Journal of proteomics, 2011 - Elsevier
Two dimensional gel electrophoresis has been one of the techniques most used for protein
separation in proteomics experiments and still continues to be so for some species such as …