Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application

A Scheben, J Batley, D Edwards - Plant biotechnology journal, 2017 - Wiley Online Library
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …

Recent advances of genome mapping and marker‐assisted selection in aquaculture

GH Yue - Fish and fisheries, 2014 - Wiley Online Library
Aquaculture is the fastest growing sector in agriculture. Substantial genetic gains have been
achieved in a few cultured species using conventional selective breeding approaches …

R/qtl2: software for mapping quantitative trait loci with high-dimensional data and multiparent populations

KW Broman, DM Gatti, P Simecek, NA Furlotte… - Genetics, 2019 - academic.oup.com
R/qtl2 is an interactive software environment for mapping quantitative trait loci (QTL) in
experimental populations. The R/qtl2 software expands the scope of the widely-used R/qtl …

MapChart: software for the graphical presentation of linkage maps and QTLs

RE Voorrips - Journal of heredity, 2002 - academic.oup.com
Over the last 15 years a wealth of linkage maps and quantitative trait loci (QTL) mapping
results have become available. The pace of generating this genetic information is …

[HTML][HTML] The statistical analysis of multi-environment data: modeling genotype-by-environment interaction and its genetic basis

M Malosetti, JM Ribaut, FA van Eeuwijk - Frontiers in physiology, 2013 - frontiersin.org
Genotype-by-environment interaction (GEI) is an important phenomenon in plant breeding.
This paper presents a series of models for describing, exploring, understanding, and …

SmartGrain: High-Throughput Phenotyping Software for Measuring Seed Shape through Image Analysis

T Tanabata, T Shibaya, K Hori, K Ebana… - Plant physiology, 2012 - academic.oup.com
Seed shape and size are among the most important agronomic traits because they affect
yield and market price. To obtain accurate seed size data, a large number of measurements …

[HTML][HTML] Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

AN Famoso, K Zhao, RT Clark, CW Tung… - PLoS …, 2011 - journals.plos.org
Aluminum (Al) toxicity is a primary limitation to crop productivity on acid soils, and rice has
been demonstrated to be significantly more Al tolerant than other cereal crops. However, the …

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture

CN Topp, AS Iyer-Pascuzzi… - Proceedings of the …, 2013 - National Acad Sciences
Identification of genes that control root system architecture in crop plants requires
innovations that enable high-throughput and accurate measurements of root system …

The Arabidopsis Epithiospecifier Protein Promotes the Hydrolysis of Glucosinolates to Nitriles and Influences Trichoplusia ni Herbivory

V Lambrix, M Reichelt, T Mitchell-Olds… - The Plant …, 2001 - academic.oup.com
Glucosinolates are anionic thioglucosides that have become one of the most frequently
studied groups of defensive metabolites in plants. When tissue damage occurs, the …

Molecular detection of QTLs for agronomic and quality traits in a doubled haploid population derived from two Canadian wheats (Triticum aestivum L.)

XQ Huang, S Cloutier, L Lycar, N Radovanovic… - Theoretical and Applied …, 2006 - Springer
Abstract Development of high-yielding wheat varieties with good end-use quality has always
been a major concern for wheat breeders. To genetically dissect quantitative trait loci (QTLs) …