Deep learning for drug repurposing: Methods, databases, and applications
Drug development is time‐consuming and expensive. Repurposing existing drugs for new
therapies is an attractive solution that accelerates drug development at reduced …
therapies is an attractive solution that accelerates drug development at reduced …
Graph neural network approaches for drug-target interactions
Developing new drugs remains prohibitively expensive, time-consuming, and often involves
safety issues. Accurate prediction of drug-target interactions (DTIs) can guide the drug …
safety issues. Accurate prediction of drug-target interactions (DTIs) can guide the drug …
Graph neural networks: foundation, frontiers and applications
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …
recent years. Graph neural networks, also known as deep learning on graphs, graph …
Comparative toxicogenomics database (CTD): update 2021
AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2021 - academic.oup.com
Abstract The public Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) is an
innovative digital ecosystem that relates toxicological information for chemicals, genes …
innovative digital ecosystem that relates toxicological information for chemicals, genes …
Open graph benchmark: Datasets for machine learning on graphs
Abstract We present the Open Graph Benchmark (OGB), a diverse set of challenging and
realistic benchmark datasets to facilitate scalable, robust, and reproducible graph machine …
realistic benchmark datasets to facilitate scalable, robust, and reproducible graph machine …
Molecular and network-level mechanisms explaining individual differences in autism spectrum disorder
The mechanisms underlying phenotypic heterogeneity in autism spectrum disorder (ASD)
are not well understood. Using a large neuroimaging dataset, we identified three latent …
are not well understood. Using a large neuroimaging dataset, we identified three latent …
Self-alignment pretraining for biomedical entity representations
Despite the widespread success of self-supervised learning via masked language models
(MLM), accurately capturing fine-grained semantic relationships in the biomedical domain …
(MLM), accurately capturing fine-grained semantic relationships in the biomedical domain …
High-depth African genomes inform human migration and health
The African continent is regarded as the cradle of modern humans and African genomes
contain more genetic variation than those from any other continent, yet only a fraction of the …
contain more genetic variation than those from any other continent, yet only a fraction of the …
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis
The growing application of gene expression profiling demands powerful yet user-friendly
bioinformatics tools to support systems-level data understanding. NetworkAnalyst was first …
bioinformatics tools to support systems-level data understanding. NetworkAnalyst was first …
Computational approaches in preclinical studies on drug discovery and development
F Wu, Y Zhou, L Li, X Shen, G Chen, X Wang… - Frontiers in …, 2020 - frontiersin.org
Because undesirable pharmacokinetics and toxicity are significant reasons for the failure of
drug development in the costly late stage, it has been widely recognized that drug ADMET …
drug development in the costly late stage, it has been widely recognized that drug ADMET …